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Cluster: ShaoY_2019_ERR3404686_bin.7_CGC29

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3404686_bin.7_k119_12811 ShaoY_2019_ERR3404686_bin.7_k119_12811_13 8921 9691 - 3.A.1.105.17
TC ShaoY_2019_ERR3404686_bin.7_k119_12811 ShaoY_2019_ERR3404686_bin.7_k119_12811_14 9688 10614 - 3.A.1.105.17
TC ShaoY_2019_ERR3404686_bin.7_k119_12811 ShaoY_2019_ERR3404686_bin.7_k119_12811_15 10723 11376 + 2.A.53.3.8
STP ShaoY_2019_ERR3404686_bin.7_k119_12811 ShaoY_2019_ERR3404686_bin.7_k119_12811_16 11455 11991 - Pribosyltran
pfam ShaoY_2019_ERR3404686_bin.7_k119_12811 ShaoY_2019_ERR3404686_bin.7_k119_12811_17 12227 13507 + Cys_Met_Meta_PP
CAZyme ShaoY_2019_ERR3404686_bin.7_k119_12811 ShaoY_2019_ERR3404686_bin.7_k119_12811_18 13510 15105 - AA1
TC ShaoY_2019_ERR3404686_bin.7_k119_12811 ShaoY_2019_ERR3404686_bin.7_k119_12811_19 15286 15633 + 8.A.2.1.3
pfam ShaoY_2019_ERR3404686_bin.7_k119_12811 ShaoY_2019_ERR3404686_bin.7_k119_12811_20 15739 16602 + Spermine_synth | Spermine_synt_N
pfam ShaoY_2019_ERR3404686_bin.7_k119_12811 ShaoY_2019_ERR3404686_bin.7_k119_12811_21 16631 17440 + AdoMet_dc
CAZyme ShaoY_2019_ERR3404686_bin.7_k119_12811 ShaoY_2019_ERR3404686_bin.7_k119_12811_22 17614 18906 + GH28
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_12811_13
Type: TC
Location: 8921 - 9691 (-)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_12811_14
Type: TC
Location: 9688 - 10614 (-)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_12811_15
Type: TC
Location: 10723 - 11376 (+)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_12811_16
Type: STP
Location: 11455 - 11991 (-)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_12811_17
Type: pfam
Location: 12227 - 13507 (+)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_12811_18
Type: CAZyme
Location: 13510 - 15105 (-)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_12811_19
Type: TC
Location: 15286 - 15633 (+)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_12811_20
Type: pfam
Location: 15739 - 16602 (+)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_12811_21
Type: pfam
Location: 16631 - 17440 (+)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_12811_22
Type: CAZyme
Location: 17614 - 18906 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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