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Cluster: ShaoY_2019_ERR3404686_bin.7_CGC27

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme ShaoY_2019_ERR3404686_bin.7_k119_11270 ShaoY_2019_ERR3404686_bin.7_k119_11270_23 24571 26010 - GH1
TF ShaoY_2019_ERR3404686_bin.7_k119_11270 ShaoY_2019_ERR3404686_bin.7_k119_11270_24 26125 26844 - HTH_6
TC ShaoY_2019_ERR3404686_bin.7_k119_11270 ShaoY_2019_ERR3404686_bin.7_k119_11270_25 27013 27666 + 1.C.113.1.10
pfam ShaoY_2019_ERR3404686_bin.7_k119_11270 ShaoY_2019_ERR3404686_bin.7_k119_11270_26 27698 28648 - TAL_FSA
pfam ShaoY_2019_ERR3404686_bin.7_k119_11270 ShaoY_2019_ERR3404686_bin.7_k119_11270_27 28791 29249 - LacAB_rpiB
TC ShaoY_2019_ERR3404686_bin.7_k119_11270 ShaoY_2019_ERR3404686_bin.7_k119_11270_28 29685 31022 + 2.A.1.14.3
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_11270_23
Type: CAZyme
Location: 24571 - 26010 (-)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_11270_24
Type: TF
Location: 26125 - 26844 (-)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_11270_25
Type: TC
Location: 27013 - 27666 (+)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_11270_26
Type: pfam
Location: 27698 - 28648 (-)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_11270_27
Type: pfam
Location: 28791 - 29249 (-)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_11270_28
Type: TC
Location: 29685 - 31022 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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