Cluster: ShaoY_2019_ERR3404686_bin.7_CGC26
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3404686_bin.7
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | ShaoY_2019_ERR3404686_bin.7_k119_11040 | ShaoY_2019_ERR3404686_bin.7_k119_11040_4 | 3576 | 5012 | + | GT20 |
| TF | ShaoY_2019_ERR3404686_bin.7_k119_11040 | ShaoY_2019_ERR3404686_bin.7_k119_11040_5 | 6044 | 6394 | + | FlhD |
| TF | ShaoY_2019_ERR3404686_bin.7_k119_11040 | ShaoY_2019_ERR3404686_bin.7_k119_11040_6 | 6394 | 6972 | + | FlhC |
| TC | ShaoY_2019_ERR3404686_bin.7_k119_11040 | ShaoY_2019_ERR3404686_bin.7_k119_11040_7 | 7105 | 7992 | + | 1.A.30.1.1 |
| TC | ShaoY_2019_ERR3404686_bin.7_k119_11040 | ShaoY_2019_ERR3404686_bin.7_k119_11040_8 | 7989 | 8933 | + | 1.A.30.1.1 |
| STP | ShaoY_2019_ERR3404686_bin.7_k119_11040 | ShaoY_2019_ERR3404686_bin.7_k119_11040_9 | 8939 | 10921 | + | CheW | CheY-binding | H-kinase_dim | HATPase_c |
| STP | ShaoY_2019_ERR3404686_bin.7_k119_11040 | ShaoY_2019_ERR3404686_bin.7_k119_11040_10 | 10945 | 11442 | + | CheW |
| TC | ShaoY_2019_ERR3404686_bin.7_k119_11040 | ShaoY_2019_ERR3404686_bin.7_k119_11040_11 | 11603 | 13273 | + | 1.B.52.2.1 |
| TC | ShaoY_2019_ERR3404686_bin.7_k119_11040 | ShaoY_2019_ERR3404686_bin.7_k119_11040_12 | 13479 | 15041 | + | 1.B.52.2.1 |
| TC | ShaoY_2019_ERR3404686_bin.7_k119_11040 | ShaoY_2019_ERR3404686_bin.7_k119_11040_13 | 15149 | 16825 | + | 1.B.52.2.1 |
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_11040_4
Type: CAZyme
Location: 3576 - 5012 (+)
Type: CAZyme
Location: 3576 - 5012 (+)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_11040_5
Type: TF
Location: 6044 - 6394 (+)
Type: TF
Location: 6044 - 6394 (+)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_11040_6
Type: TF
Location: 6394 - 6972 (+)
Type: TF
Location: 6394 - 6972 (+)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_11040_7
Type: TC
Location: 7105 - 7992 (+)
Type: TC
Location: 7105 - 7992 (+)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_11040_8
Type: TC
Location: 7989 - 8933 (+)
Type: TC
Location: 7989 - 8933 (+)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_11040_9
Type: STP
Location: 8939 - 10921 (+)
Type: STP
Location: 8939 - 10921 (+)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_11040_10
Type: STP
Location: 10945 - 11442 (+)
Type: STP
Location: 10945 - 11442 (+)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_11040_11
Type: TC
Location: 11603 - 13273 (+)
Type: TC
Location: 11603 - 13273 (+)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_11040_12
Type: TC
Location: 13479 - 15041 (+)
Type: TC
Location: 13479 - 15041 (+)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_11040_13
Type: TC
Location: 15149 - 16825 (+)
Type: TC
Location: 15149 - 16825 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Pantoea
Species
Pantoea astica
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| ShaoY_2019_ERR3404686_bin.7_k119_11040_9 | vegetarian > vegan | 2.02085 | 0.01460 |