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Cluster: ShaoY_2019_ERR3404686_bin.7_CGC20

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC ShaoY_2019_ERR3404686_bin.7_k119_9232 ShaoY_2019_ERR3404686_bin.7_k119_9232_1 1 267 - 2.A.6.2.39
TC ShaoY_2019_ERR3404686_bin.7_k119_9232 ShaoY_2019_ERR3404686_bin.7_k119_9232_2 264 1496 - 8.A.1.6.2
pfam ShaoY_2019_ERR3404686_bin.7_k119_9232 ShaoY_2019_ERR3404686_bin.7_k119_9232_3 1977 3704 - Transpeptidase | PBP_dimer
TC ShaoY_2019_ERR3404686_bin.7_k119_9232 ShaoY_2019_ERR3404686_bin.7_k119_9232_4 3984 6257 - 5.A.3.4.1
TF ShaoY_2019_ERR3404686_bin.7_k119_9232 ShaoY_2019_ERR3404686_bin.7_k119_9232_5 6450 7454 + LacI
CAZyme ShaoY_2019_ERR3404686_bin.7_k119_9232 ShaoY_2019_ERR3404686_bin.7_k119_9232_6 7485 9884 - GH20
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_9232_1
Type: TC
Location: 1 - 267 (-)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_9232_2
Type: TC
Location: 264 - 1496 (-)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_9232_3
Type: pfam
Location: 1977 - 3704 (-)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_9232_4
Type: TC
Location: 3984 - 6257 (-)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_9232_5
Type: TF
Location: 6450 - 7454 (+)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_9232_6
Type: CAZyme
Location: 7485 - 9884 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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