Cluster: ShaoY_2019_ERR3404686_bin.7_CGC18
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: ShaoY_2019_ERR3404686_bin.7
- CGC Family ID: CGCFAM_09876
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | ShaoY_2019_ERR3404686_bin.7_k119_8677 | ShaoY_2019_ERR3404686_bin.7_k119_8677_5 | 2429 | 3256 | + | 3.A.1.17.4 |
| TC | ShaoY_2019_ERR3404686_bin.7_k119_8677 | ShaoY_2019_ERR3404686_bin.7_k119_8677_6 | 3261 | 4076 | + | 3.A.1.17.3 |
| pfam | ShaoY_2019_ERR3404686_bin.7_k119_8677 | ShaoY_2019_ERR3404686_bin.7_k119_8677_7 | 4101 | 5522 | + | FAD_binding_4 |
| CAZyme | ShaoY_2019_ERR3404686_bin.7_k119_8677 | ShaoY_2019_ERR3404686_bin.7_k119_8677_8 | 5599 | 7809 | - | AA2 |
| TC | ShaoY_2019_ERR3404686_bin.7_k119_8677 | ShaoY_2019_ERR3404686_bin.7_k119_8677_9 | 8012 | 11074 | - | 2.A.6.2.17 |
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_8677_5
Type: TC
Location: 2429 - 3256 (+)
Type: TC
Location: 2429 - 3256 (+)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_8677_6
Type: TC
Location: 3261 - 4076 (+)
Type: TC
Location: 3261 - 4076 (+)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_8677_7
Type: pfam
Location: 4101 - 5522 (+)
Type: pfam
Location: 4101 - 5522 (+)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_8677_8
Type: CAZyme
Location: 5599 - 7809 (-)
Type: CAZyme
Location: 5599 - 7809 (-)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_8677_9
Type: TC
Location: 8012 - 11074 (-)
Type: TC
Location: 8012 - 11074 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Pantoea
Species
Pantoea astica
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.