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Cluster: ShaoY_2019_ERR3404686_bin.7_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme ShaoY_2019_ERR3404686_bin.7_k119_7880 ShaoY_2019_ERR3404686_bin.7_k119_7880_8 7447 8442 + GT2
pfam ShaoY_2019_ERR3404686_bin.7_k119_7880 ShaoY_2019_ERR3404686_bin.7_k119_7880_9 8439 10421 + Formyl_trans_N | Epimerase | Formyl_trans_C | GDP_Man_Dehyd
pfam ShaoY_2019_ERR3404686_bin.7_k119_7880 ShaoY_2019_ERR3404686_bin.7_k119_7880_10 10418 11320 + Polysacc_deac_1
CAZyme ShaoY_2019_ERR3404686_bin.7_k119_7880 ShaoY_2019_ERR3404686_bin.7_k119_7880_11 11325 12986 + GT83
TC ShaoY_2019_ERR3404686_bin.7_k119_7880 ShaoY_2019_ERR3404686_bin.7_k119_7880_12 12986 13309 + 2.A.7.22.2
TC ShaoY_2019_ERR3404686_bin.7_k119_7880 ShaoY_2019_ERR3404686_bin.7_k119_7880_13 13306 13674 + 2.A.7.22.1
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_7880_8
Type: CAZyme
Location: 7447 - 8442 (+)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_7880_9
Type: pfam
Location: 8439 - 10421 (+)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_7880_10
Type: pfam
Location: 10418 - 11320 (+)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_7880_11
Type: CAZyme
Location: 11325 - 12986 (+)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_7880_12
Type: TC
Location: 12986 - 13309 (+)
Gene ID: ShaoY_2019_ERR3404686_bin.7_k119_7880_13
Type: TC
Location: 13306 - 13674 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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