Cluster: SPMP94_bin.81_CGC8
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 5
- Substrate:
- Genome ID: SPMP94_bin.81
- CGC Family ID: CGCFAM_00397
- Continent: Asia
- Source Study: Gounot et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | opera_contig_186506 | opera_contig_186506_429 | 477386 | 477667 | + | 8.A.3.2.2 |
| TC | opera_contig_186506 | opera_contig_186506_430 | 477688 | 479577 | + | 9.B.18.2.1 |
| STP | opera_contig_186506 | opera_contig_186506_431 | 479574 | 480770 | + | Aminotran_1_2 |
| TC | opera_contig_186506 | opera_contig_186506_432 | 480810 | 481466 | + | 9.B.18.1.2 |
| pfam | opera_contig_186506 | opera_contig_186506_433 | 481463 | 482053 | + | PglD_N |
| CAZyme | opera_contig_186506 | opera_contig_186506_434 | 482067 | 483164 | + | GT4 |
| CAZyme | opera_contig_186506 | opera_contig_186506_435 | 483177 | 484325 | + | GT4 |
| CAZyme | opera_contig_186506 | opera_contig_186506_436 | 484356 | 485462 | + | GT4 |
| CAZyme | opera_contig_186506 | opera_contig_186506_437 | 485476 | 486342 | + | GT2 |
| CAZyme | opera_contig_186506 | opera_contig_186506_438 | 486355 | 487242 | + | GT2 |
Gene ID: opera_contig_186506_429
Type: TC
Location: 477386 - 477667 (+)
Type: TC
Location: 477386 - 477667 (+)
Gene ID: opera_contig_186506_430
Type: TC
Location: 477688 - 479577 (+)
Type: TC
Location: 477688 - 479577 (+)
Gene ID: opera_contig_186506_431
Type: STP
Location: 479574 - 480770 (+)
Type: STP
Location: 479574 - 480770 (+)
Gene ID: opera_contig_186506_432
Type: TC
Location: 480810 - 481466 (+)
Type: TC
Location: 480810 - 481466 (+)
Gene ID: opera_contig_186506_433
Type: pfam
Location: 481463 - 482053 (+)
Type: pfam
Location: 481463 - 482053 (+)
Gene ID: opera_contig_186506_434
Type: CAZyme
Location: 482067 - 483164 (+)
Type: CAZyme
Location: 482067 - 483164 (+)
Gene ID: opera_contig_186506_435
Type: CAZyme
Location: 483177 - 484325 (+)
Type: CAZyme
Location: 483177 - 484325 (+)
Gene ID: opera_contig_186506_436
Type: CAZyme
Location: 484356 - 485462 (+)
Type: CAZyme
Location: 484356 - 485462 (+)
Gene ID: opera_contig_186506_437
Type: CAZyme
Location: 485476 - 486342 (+)
Type: CAZyme
Location: 485476 - 486342 (+)
Gene ID: opera_contig_186506_438
Type: CAZyme
Location: 486355 - 487242 (+)
Type: CAZyme
Location: 486355 - 487242 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Ligilactobacillus
Species
Ligilactobacillus salivarius
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.