Cluster: SPMP94_bin.81_CGC2
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 6
- Substrate:
- Genome ID: SPMP94_bin.81
- Continent: Asia
- Source Study: Gounot et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | opera_contig_186506 | opera_contig_186506_13 | 13390 | 14997 | + | 2.A.3.7.6 |
| pfam | opera_contig_186506 | opera_contig_186506_14 | 15109 | 15780 | - | Hydrolase | HAD_2 |
| CAZyme | opera_contig_186506 | opera_contig_186506_15 | 15790 | 18054 | - | GH65 |
| pfam | opera_contig_186506 | opera_contig_186506_16 | 18069 | 19061 | - | Aldose_epim |
| TC | opera_contig_186506 | opera_contig_186506_17 | 19065 | 20420 | - | 2.A.2.6.2 |
| TF | opera_contig_186506 | opera_contig_186506_18 | 20576 | 21571 | - | LacI |
| TC | opera_contig_186506 | opera_contig_186506_19 | 21709 | 23733 | - | 2.A.72.1.3 |
| pfam | opera_contig_186506 | opera_contig_186506_20 | 23992 | 24405 | - | DUF3284 |
| TC | opera_contig_186506 | opera_contig_186506_21 | 24438 | 25718 | - | 3.A.18.1.1 |
| pfam | opera_contig_186506 | opera_contig_186506_22 | 25737 | 26747 | - | GFO_IDH_MocA |
| pfam | opera_contig_186506 | opera_contig_186506_23 | 26985 | 27344 | + | DUF4828 |
| CAZyme | opera_contig_186506 | opera_contig_186506_24 | 27453 | 29276 | - | GH13_39 |
| CAZyme | opera_contig_186506 | opera_contig_186506_25 | 29257 | 31680 | - | GT35 |
| CAZyme | opera_contig_186506 | opera_contig_186506_26 | 31709 | 33139 | - | GT5 |
| pfam | opera_contig_186506 | opera_contig_186506_27 | 33139 | 34311 | - | NTP_transferase | Hexapep_GlmU |
| pfam | opera_contig_186506 | opera_contig_186506_28 | 34301 | 35443 | - | NTP_transferase | NTP_transf_3 | Hexapep_GlmU |
| CAZyme | opera_contig_186506 | opera_contig_186506_29 | 35545 | 37494 | - | CBM48 | GH13_9 |
| CAZyme | opera_contig_186506 | opera_contig_186506_30 | 37699 | 39462 | - | CBM34 | GH13_20 |
Gene ID: opera_contig_186506_13
Type: TC
Location: 13390 - 14997 (+)
Type: TC
Location: 13390 - 14997 (+)
Gene ID: opera_contig_186506_14
Type: pfam
Location: 15109 - 15780 (-)
Type: pfam
Location: 15109 - 15780 (-)
Gene ID: opera_contig_186506_15
Type: CAZyme
Location: 15790 - 18054 (-)
Type: CAZyme
Location: 15790 - 18054 (-)
Gene ID: opera_contig_186506_16
Type: pfam
Location: 18069 - 19061 (-)
Type: pfam
Location: 18069 - 19061 (-)
Gene ID: opera_contig_186506_17
Type: TC
Location: 19065 - 20420 (-)
Type: TC
Location: 19065 - 20420 (-)
Gene ID: opera_contig_186506_18
Type: TF
Location: 20576 - 21571 (-)
Type: TF
Location: 20576 - 21571 (-)
Gene ID: opera_contig_186506_19
Type: TC
Location: 21709 - 23733 (-)
Type: TC
Location: 21709 - 23733 (-)
Gene ID: opera_contig_186506_20
Type: pfam
Location: 23992 - 24405 (-)
Type: pfam
Location: 23992 - 24405 (-)
Gene ID: opera_contig_186506_21
Type: TC
Location: 24438 - 25718 (-)
Type: TC
Location: 24438 - 25718 (-)
Gene ID: opera_contig_186506_22
Type: pfam
Location: 25737 - 26747 (-)
Type: pfam
Location: 25737 - 26747 (-)
Gene ID: opera_contig_186506_23
Type: pfam
Location: 26985 - 27344 (+)
Type: pfam
Location: 26985 - 27344 (+)
Gene ID: opera_contig_186506_24
Type: CAZyme
Location: 27453 - 29276 (-)
Type: CAZyme
Location: 27453 - 29276 (-)
Gene ID: opera_contig_186506_25
Type: CAZyme
Location: 29257 - 31680 (-)
Type: CAZyme
Location: 29257 - 31680 (-)
Gene ID: opera_contig_186506_26
Type: CAZyme
Location: 31709 - 33139 (-)
Type: CAZyme
Location: 31709 - 33139 (-)
Gene ID: opera_contig_186506_27
Type: pfam
Location: 33139 - 34311 (-)
Type: pfam
Location: 33139 - 34311 (-)
Gene ID: opera_contig_186506_28
Type: pfam
Location: 34301 - 35443 (-)
Type: pfam
Location: 34301 - 35443 (-)
Gene ID: opera_contig_186506_29
Type: CAZyme
Location: 35545 - 37494 (-)
Type: CAZyme
Location: 35545 - 37494 (-)
Gene ID: opera_contig_186506_30
Type: CAZyme
Location: 37699 - 39462 (-)
Type: CAZyme
Location: 37699 - 39462 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Ligilactobacillus
Species
Ligilactobacillus salivarius
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.