Cluster: SPMP94_bin.81_CGC16
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 3
- Substrate:
- Genome ID: SPMP94_bin.81
- Continent: Asia
- Source Study: Gounot et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | opera_contig_186507 | opera_contig_186507_50 | 50561 | 51286 | + | 8.A.3.2.1 |
| pfam | opera_contig_186507 | opera_contig_186507_51 | 51638 | 52414 | + | CpsB_CapC |
| pfam | opera_contig_186507 | opera_contig_186507_52 | 52434 | 53408 | + | LytR_cpsA_psr |
| TC | opera_contig_186507 | opera_contig_186507_53 | 53488 | 54153 | + | 9.B.18.1.2 |
| CAZyme | opera_contig_186507 | opera_contig_186507_54 | 54197 | 55081 | + | GT14 |
| STP | opera_contig_186507 | opera_contig_186507_55 | 55103 | 56215 | + | Pyr_redox |
| CAZyme | opera_contig_186507 | opera_contig_186507_56 | 56234 | 57226 | + | GT2 |
| TC | opera_contig_186507 | opera_contig_186507_57 | 57309 | 58733 | + | 2.A.66.2.16 |
| NULL(UNKNOWN) | opera_contig_186507 | opera_contig_186507_58 | 58749 | 59936 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | opera_contig_186507 | opera_contig_186507_59 | 59944 | 60939 | + | GT113 |
| STP | opera_contig_186507 | opera_contig_186507_60 | 61147 | 64116 | + | Peptidase_M23 |
| NULL(UNKNOWN) | opera_contig_186507 | opera_contig_186507_61 | 64149 | 64796 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | opera_contig_186507 | opera_contig_186507_62 | 64864 | 66036 | - | 2.A.1.2.10 |
| pfam | opera_contig_186507 | opera_contig_186507_63 | 66041 | 66364 | - | MazG |
| TC | opera_contig_186507 | opera_contig_186507_64 | 66647 | 68137 | + | 2.A.3.7.5 |
| TC | opera_contig_186507 | opera_contig_186507_65 | 68361 | 69866 | + | 3.A.1.3.20 |
| TC | opera_contig_186507 | opera_contig_186507_66 | 69859 | 70599 | + | 3.A.1.3.15 |
Gene ID: opera_contig_186507_50
Type: TC
Location: 50561 - 51286 (+)
Type: TC
Location: 50561 - 51286 (+)
Gene ID: opera_contig_186507_51
Type: pfam
Location: 51638 - 52414 (+)
Type: pfam
Location: 51638 - 52414 (+)
Gene ID: opera_contig_186507_52
Type: pfam
Location: 52434 - 53408 (+)
Type: pfam
Location: 52434 - 53408 (+)
Gene ID: opera_contig_186507_53
Type: TC
Location: 53488 - 54153 (+)
Type: TC
Location: 53488 - 54153 (+)
Gene ID: opera_contig_186507_54
Type: CAZyme
Location: 54197 - 55081 (+)
Type: CAZyme
Location: 54197 - 55081 (+)
Gene ID: opera_contig_186507_55
Type: STP
Location: 55103 - 56215 (+)
Type: STP
Location: 55103 - 56215 (+)
Gene ID: opera_contig_186507_56
Type: CAZyme
Location: 56234 - 57226 (+)
Type: CAZyme
Location: 56234 - 57226 (+)
Gene ID: opera_contig_186507_57
Type: TC
Location: 57309 - 58733 (+)
Type: TC
Location: 57309 - 58733 (+)
Gene ID: opera_contig_186507_58
Type:
Location: 58749 - 59936 (+)
Type:
Location: 58749 - 59936 (+)
Gene ID: opera_contig_186507_59
Type: CAZyme
Location: 59944 - 60939 (+)
Type: CAZyme
Location: 59944 - 60939 (+)
Gene ID: opera_contig_186507_60
Type: STP
Location: 61147 - 64116 (+)
Type: STP
Location: 61147 - 64116 (+)
Gene ID: opera_contig_186507_61
Type:
Location: 64149 - 64796 (+)
Type:
Location: 64149 - 64796 (+)
Gene ID: opera_contig_186507_62
Type: TC
Location: 64864 - 66036 (-)
Type: TC
Location: 64864 - 66036 (-)
Gene ID: opera_contig_186507_63
Type: pfam
Location: 66041 - 66364 (-)
Type: pfam
Location: 66041 - 66364 (-)
Gene ID: opera_contig_186507_64
Type: TC
Location: 66647 - 68137 (+)
Type: TC
Location: 66647 - 68137 (+)
Gene ID: opera_contig_186507_65
Type: TC
Location: 68361 - 69866 (+)
Type: TC
Location: 68361 - 69866 (+)
Gene ID: opera_contig_186507_66
Type: TC
Location: 69859 - 70599 (+)
Type: TC
Location: 69859 - 70599 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Ligilactobacillus
Species
Ligilactobacillus salivarius
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.