Cluster: SPMP94_bin.81_CGC15
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 5
- Substrate:
- Genome ID: SPMP94_bin.81
- CGC Family ID: CGCFAM_00006
- Continent: Asia
- Source Study: Gounot et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | opera_contig_186507 | opera_contig_186507_37 | 34294 | 35457 | + | GT4 |
| CAZyme | opera_contig_186507 | opera_contig_186507_38 | 35460 | 36818 | + | GT4 |
| pfam | opera_contig_186507 | opera_contig_186507_39 | 36802 | 37464 | + | Hexapep | Hexapep_2 |
| CAZyme | opera_contig_186507 | opera_contig_186507_40 | 37625 | 39007 | + | GT2 |
| CAZyme | opera_contig_186507 | opera_contig_186507_41 | 39031 | 39867 | + | GT2 |
| NULL(UNKNOWN) | opera_contig_186507 | opera_contig_186507_42 | 39904 | 41133 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | opera_contig_186507 | opera_contig_186507_43 | 42542 | 43417 | + | GT2 |
| pfam | opera_contig_186507 | opera_contig_186507_44 | 43641 | 44084 | + | Hexapep |
| TC | opera_contig_186507 | opera_contig_186507_45 | 44133 | 45581 | + | 2.A.66.2.1 |
Gene ID: opera_contig_186507_37
Type: CAZyme
Location: 34294 - 35457 (+)
Type: CAZyme
Location: 34294 - 35457 (+)
Gene ID: opera_contig_186507_38
Type: CAZyme
Location: 35460 - 36818 (+)
Type: CAZyme
Location: 35460 - 36818 (+)
Gene ID: opera_contig_186507_39
Type: pfam
Location: 36802 - 37464 (+)
Type: pfam
Location: 36802 - 37464 (+)
Gene ID: opera_contig_186507_40
Type: CAZyme
Location: 37625 - 39007 (+)
Type: CAZyme
Location: 37625 - 39007 (+)
Gene ID: opera_contig_186507_41
Type: CAZyme
Location: 39031 - 39867 (+)
Type: CAZyme
Location: 39031 - 39867 (+)
Gene ID: opera_contig_186507_42
Type:
Location: 39904 - 41133 (+)
Type:
Location: 39904 - 41133 (+)
Gene ID: opera_contig_186507_43
Type: CAZyme
Location: 42542 - 43417 (+)
Type: CAZyme
Location: 42542 - 43417 (+)
Gene ID: opera_contig_186507_44
Type: pfam
Location: 43641 - 44084 (+)
Type: pfam
Location: 43641 - 44084 (+)
Gene ID: opera_contig_186507_45
Type: TC
Location: 44133 - 45581 (+)
Type: TC
Location: 44133 - 45581 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Ligilactobacillus
Species
Ligilactobacillus salivarius
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.