Cluster: SPMP94_bin.81_CGC13
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 3
- Substrate:
- Genome ID: SPMP94_bin.81
- CGC Family ID: CGCFAM_00255
- Continent: Asia
- Source Study: Gounot et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | opera_contig_186506 | opera_contig_186506_948 | 999682 | 1000701 | - | 4.D.2.1.7 |
| CAZyme | opera_contig_186506 | opera_contig_186506_949 | 1000706 | 1001716 | - | GT4 |
| CAZyme | opera_contig_186506 | opera_contig_186506_950 | 1001719 | 1002918 | - | GT4 |
| TC | opera_contig_186506 | opera_contig_186506_951 | 1003095 | 1004816 | - | 8.A.7.1.1 |
| STP | opera_contig_186506 | opera_contig_186506_952 | 1004816 | 1005082 | - | PTS-HPr |
| NULL(UNKNOWN) | opera_contig_186506 | opera_contig_186506_953 | 1005341 | 1005535 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | opera_contig_186506 | opera_contig_186506_954 | 1005684 | 1007876 | + | 3.A.9.1.2 |
| pfam | opera_contig_186506 | opera_contig_186506_955 | 1007989 | 1008276 | + | DUF1827 |
| pfam | opera_contig_186506 | opera_contig_186506_956 | 1008425 | 1009465 | + | MucBP | MucBP |
| CAZyme | opera_contig_186506 | opera_contig_186506_957 | 1009508 | 1011703 | - | GH36 |
Gene ID: opera_contig_186506_948
Type: TC
Location: 999682 - 1000701 (-)
Type: TC
Location: 999682 - 1000701 (-)
Gene ID: opera_contig_186506_949
Type: CAZyme
Location: 1000706 - 1001716 (-)
Type: CAZyme
Location: 1000706 - 1001716 (-)
Gene ID: opera_contig_186506_950
Type: CAZyme
Location: 1001719 - 1002918 (-)
Type: CAZyme
Location: 1001719 - 1002918 (-)
Gene ID: opera_contig_186506_951
Type: TC
Location: 1003095 - 1004816 (-)
Type: TC
Location: 1003095 - 1004816 (-)
Gene ID: opera_contig_186506_952
Type: STP
Location: 1004816 - 1005082 (-)
Type: STP
Location: 1004816 - 1005082 (-)
Gene ID: opera_contig_186506_953
Type:
Location: 1005341 - 1005535 (-)
Type:
Location: 1005341 - 1005535 (-)
Gene ID: opera_contig_186506_954
Type: TC
Location: 1005684 - 1007876 (+)
Type: TC
Location: 1005684 - 1007876 (+)
Gene ID: opera_contig_186506_955
Type: pfam
Location: 1007989 - 1008276 (+)
Type: pfam
Location: 1007989 - 1008276 (+)
Gene ID: opera_contig_186506_956
Type: pfam
Location: 1008425 - 1009465 (+)
Type: pfam
Location: 1008425 - 1009465 (+)
Gene ID: opera_contig_186506_957
Type: CAZyme
Location: 1009508 - 1011703 (-)
Type: CAZyme
Location: 1009508 - 1011703 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Ligilactobacillus
Species
Ligilactobacillus salivarius
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.