Cluster: SPMP65_bin.7_CGC6
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: SPMP65_bin.7
- Continent: Asia
- Source Study: Gounot et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | opera_contig_110539 | opera_contig_110539_29 | 32381 | 33892 | + | 4.A.2.1.6 |
| TC | opera_contig_110539 | opera_contig_110539_30 | 33917 | 34363 | + | 4.A.2.1.8 |
| CAZyme | opera_contig_110539 | opera_contig_110539_31 | 34448 | 37063 | + | GH38 |
| TF | opera_contig_110539 | opera_contig_110539_32 | 37068 | 37883 | + | HTH_6 |
| CAZyme | opera_contig_110539 | opera_contig_110539_33 | 37883 | 39268 | + | GH1 |
Gene ID: opera_contig_110539_29
Type: TC
Location: 32381 - 33892 (+)
Type: TC
Location: 32381 - 33892 (+)
Gene ID: opera_contig_110539_30
Type: TC
Location: 33917 - 34363 (+)
Type: TC
Location: 33917 - 34363 (+)
Gene ID: opera_contig_110539_31
Type: CAZyme
Location: 34448 - 37063 (+)
Type: CAZyme
Location: 34448 - 37063 (+)
Gene ID: opera_contig_110539_32
Type: TF
Location: 37068 - 37883 (+)
Type: TF
Location: 37068 - 37883 (+)
Gene ID: opera_contig_110539_33
Type: CAZyme
Location: 37883 - 39268 (+)
Type: CAZyme
Location: 37883 - 39268 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Pediococcus
Species
Pediococcus acidilactici_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.