Cluster: SPMP65_bin.7_CGC5
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: SPMP65_bin.7
- Continent: Asia
- Source Study: Gounot et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | opera_contig_110538 | opera_contig_110538_24 | 25943 | 27250 | + | 2.A.40.7.2 |
| pfam | opera_contig_110538 | opera_contig_110538_25 | 27448 | 28206 | + | RNase_H | Cauli_VI |
| CAZyme | opera_contig_110538 | opera_contig_110538_26 | 28490 | 29617 | + | GH126 |
| NULL(UNKNOWN) | opera_contig_110538 | opera_contig_110538_27 | 29688 | 31118 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | opera_contig_110538 | opera_contig_110538_28 | 31111 | 32661 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | opera_contig_110538 | opera_contig_110538_29 | 32698 | 33927 | + | GT2 |
Gene ID: opera_contig_110538_24
Type: TC
Location: 25943 - 27250 (+)
Type: TC
Location: 25943 - 27250 (+)
Gene ID: opera_contig_110538_25
Type: pfam
Location: 27448 - 28206 (+)
Type: pfam
Location: 27448 - 28206 (+)
Gene ID: opera_contig_110538_26
Type: CAZyme
Location: 28490 - 29617 (+)
Type: CAZyme
Location: 28490 - 29617 (+)
Gene ID: opera_contig_110538_27
Type:
Location: 29688 - 31118 (+)
Type:
Location: 29688 - 31118 (+)
Gene ID: opera_contig_110538_28
Type:
Location: 31111 - 32661 (+)
Type:
Location: 31111 - 32661 (+)
Gene ID: opera_contig_110538_29
Type: CAZyme
Location: 32698 - 33927 (+)
Type: CAZyme
Location: 32698 - 33927 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Pediococcus
Species
Pediococcus acidilactici_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.