Cluster: SPMP65_bin.7_CGC25
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: SPMP65_bin.7
- Continent: Asia
- Source Study: Gounot et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | opera_contig_110549 | opera_contig_110549_32 | 34454 | 36823 | + | 3.A.5.10.1 |
| TC | opera_contig_110549 | opera_contig_110549_33 | 36820 | 38055 | + | 3.A.5.3.1 |
| pfam | opera_contig_110549 | opera_contig_110549_34 | 38074 | 39744 | + | Asp1 | Asp1 |
| TC | opera_contig_110549 | opera_contig_110549_35 | 39728 | 41329 | + | 3.A.5.10.1 |
| pfam | opera_contig_110549 | opera_contig_110549_36 | 41319 | 42128 | + | Sec-ASP3 |
| CAZyme | opera_contig_110549 | opera_contig_110549_37 | 42172 | 43617 | + | GT4 |
Gene ID: opera_contig_110549_32
Type: TC
Location: 34454 - 36823 (+)
Type: TC
Location: 34454 - 36823 (+)
Gene ID: opera_contig_110549_33
Type: TC
Location: 36820 - 38055 (+)
Type: TC
Location: 36820 - 38055 (+)
Gene ID: opera_contig_110549_34
Type: pfam
Location: 38074 - 39744 (+)
Type: pfam
Location: 38074 - 39744 (+)
Gene ID: opera_contig_110549_35
Type: TC
Location: 39728 - 41329 (+)
Type: TC
Location: 39728 - 41329 (+)
Gene ID: opera_contig_110549_36
Type: pfam
Location: 41319 - 42128 (+)
Type: pfam
Location: 41319 - 42128 (+)
Gene ID: opera_contig_110549_37
Type: CAZyme
Location: 42172 - 43617 (+)
Type: CAZyme
Location: 42172 - 43617 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Pediococcus
Species
Pediococcus acidilactici_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.