Cluster: SPMP65_bin.7_CGC21
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: SPMP65_bin.7
- CGC Family ID: CGCFAM_01534
- Continent: Asia
- Source Study: Gounot et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | opera_contig_110545 | opera_contig_110545_40 | 40220 | 41548 | + | GT2 |
| CAZyme | opera_contig_110545 | opera_contig_110545_41 | 41676 | 43115 | + | GH1 |
| pfam | opera_contig_110545 | opera_contig_110545_42 | 43223 | 44023 | + | PHP |
| TC | opera_contig_110545 | opera_contig_110545_43 | 49519 | 50535 | + | 8.A.5.1.6 |
Gene ID: opera_contig_110545_40
Type: CAZyme
Location: 40220 - 41548 (+)
Type: CAZyme
Location: 40220 - 41548 (+)
Gene ID: opera_contig_110545_41
Type: CAZyme
Location: 41676 - 43115 (+)
Type: CAZyme
Location: 41676 - 43115 (+)
Gene ID: opera_contig_110545_42
Type: pfam
Location: 43223 - 44023 (+)
Type: pfam
Location: 43223 - 44023 (+)
Gene ID: opera_contig_110545_43
Type: TC
Location: 49519 - 50535 (+)
Type: TC
Location: 49519 - 50535 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Pediococcus
Species
Pediococcus acidilactici_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.