Cluster: SPMP65_bin.7_CGC20
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: SPMP65_bin.7
- Continent: Asia
- Source Study: Gounot et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | opera_contig_110544 | opera_contig_110544_72 | 70597 | 73797 | + | 9.B.74.1.3 |
| pfam | opera_contig_110544 | opera_contig_110544_73 | 73930 | 74574 | + | DUF4767 |
| TF | opera_contig_110544 | opera_contig_110544_74 | 74679 | 75392 | - | GntR |
| CAZyme | opera_contig_110544 | opera_contig_110544_75 | 75547 | 76920 | + | GH1 |
| TC | opera_contig_110544 | opera_contig_110544_76 | 76945 | 78291 | + | 4.A.3.2.9 |
Gene ID: opera_contig_110544_72
Type: TC
Location: 70597 - 73797 (+)
Type: TC
Location: 70597 - 73797 (+)
Gene ID: opera_contig_110544_73
Type: pfam
Location: 73930 - 74574 (+)
Type: pfam
Location: 73930 - 74574 (+)
Gene ID: opera_contig_110544_74
Type: TF
Location: 74679 - 75392 (-)
Type: TF
Location: 74679 - 75392 (-)
Gene ID: opera_contig_110544_75
Type: CAZyme
Location: 75547 - 76920 (+)
Type: CAZyme
Location: 75547 - 76920 (+)
Gene ID: opera_contig_110544_76
Type: TC
Location: 76945 - 78291 (+)
Type: TC
Location: 76945 - 78291 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Pediococcus
Species
Pediococcus acidilactici_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.