Cluster: SPMP65_bin.7_CGC18
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 1
- Substrate:
- Genome ID: SPMP65_bin.7
- CGC Family ID: CGCFAM_08798
- Continent: Asia
- Source Study: Gounot et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | opera_contig_110543 | opera_contig_110543_34 | 38205 | 38789 | - | 3.D.1.8.1 |
| TF | opera_contig_110543 | opera_contig_110543_35 | 38910 | 39731 | - | HTH_AraC |
| CAZyme | opera_contig_110543 | opera_contig_110543_36 | 39910 | 41565 | + | CBM91 | GH43_11 |
| TC | opera_contig_110543 | opera_contig_110543_37 | 41581 | 42819 | + | 2.A.1.2.93 |
| STP | opera_contig_110543 | opera_contig_110543_38 | 42894 | 43886 | - | SIS |
| TC | opera_contig_110543 | opera_contig_110543_39 | 43908 | 44726 | - | 4.A.6.1.19 |
| TC | opera_contig_110543 | opera_contig_110543_40 | 44716 | 45486 | - | 4.A.6.1.19 |
| TC | opera_contig_110543 | opera_contig_110543_41 | 45504 | 45962 | - | 4.A.6.1.19 |
| TC | opera_contig_110543 | opera_contig_110543_42 | 45980 | 46399 | - | 4.A.6.1.19 |
| TC | opera_contig_110543 | opera_contig_110543_43 | 46484 | 49222 | - | 3.A.23.1.1 |
| TC | opera_contig_110543 | opera_contig_110543_44 | 49539 | 50381 | - | 8.A.5.1.6 |
| NULL(UNKNOWN) | opera_contig_110543 | opera_contig_110543_45 | 50459 | 52834 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | opera_contig_110543 | opera_contig_110543_46 | 52954 | 53808 | - | HTH_AraC | HTH_AraC |
| TC | opera_contig_110543 | opera_contig_110543_47 | 54046 | 55425 | + | 2.A.2.3.3 |
Gene ID: opera_contig_110543_34
Type: TC
Location: 38205 - 38789 (-)
Type: TC
Location: 38205 - 38789 (-)
Gene ID: opera_contig_110543_35
Type: TF
Location: 38910 - 39731 (-)
Type: TF
Location: 38910 - 39731 (-)
Gene ID: opera_contig_110543_36
Type: CAZyme
Location: 39910 - 41565 (+)
Type: CAZyme
Location: 39910 - 41565 (+)
Gene ID: opera_contig_110543_37
Type: TC
Location: 41581 - 42819 (+)
Type: TC
Location: 41581 - 42819 (+)
Gene ID: opera_contig_110543_38
Type: STP
Location: 42894 - 43886 (-)
Type: STP
Location: 42894 - 43886 (-)
Gene ID: opera_contig_110543_39
Type: TC
Location: 43908 - 44726 (-)
Type: TC
Location: 43908 - 44726 (-)
Gene ID: opera_contig_110543_40
Type: TC
Location: 44716 - 45486 (-)
Type: TC
Location: 44716 - 45486 (-)
Gene ID: opera_contig_110543_41
Type: TC
Location: 45504 - 45962 (-)
Type: TC
Location: 45504 - 45962 (-)
Gene ID: opera_contig_110543_42
Type: TC
Location: 45980 - 46399 (-)
Type: TC
Location: 45980 - 46399 (-)
Gene ID: opera_contig_110543_43
Type: TC
Location: 46484 - 49222 (-)
Type: TC
Location: 46484 - 49222 (-)
Gene ID: opera_contig_110543_44
Type: TC
Location: 49539 - 50381 (-)
Type: TC
Location: 49539 - 50381 (-)
Gene ID: opera_contig_110543_45
Type:
Location: 50459 - 52834 (-)
Type:
Location: 50459 - 52834 (-)
Gene ID: opera_contig_110543_46
Type: TF
Location: 52954 - 53808 (-)
Type: TF
Location: 52954 - 53808 (-)
Gene ID: opera_contig_110543_47
Type: TC
Location: 54046 - 55425 (+)
Type: TC
Location: 54046 - 55425 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Pediococcus
Species
Pediococcus acidilactici_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.