Cluster: SPMP65_bin.7_CGC17
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: SPMP65_bin.7
- Continent: Asia
- Source Study: Gounot et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | opera_contig_110543 | opera_contig_110543_25 | 27776 | 28756 | + | GH43_26 |
| TC | opera_contig_110543 | opera_contig_110543_26 | 28768 | 30018 | + | 2.A.1.5.2 |
| STP | opera_contig_110543 | opera_contig_110543_27 | 30317 | 31615 | - | Glycos_trans_3N |
| STP | opera_contig_110543 | opera_contig_110543_28 | 31638 | 32588 | - | HTH_IclR |
| TC | opera_contig_110543 | opera_contig_110543_29 | 32601 | 33866 | - | 2.A.40.7.2 |
| TC | opera_contig_110543 | opera_contig_110543_30 | 33900 | 35174 | - | 2.A.41.1.3 |
Gene ID: opera_contig_110543_25
Type: CAZyme
Location: 27776 - 28756 (+)
Type: CAZyme
Location: 27776 - 28756 (+)
Gene ID: opera_contig_110543_26
Type: TC
Location: 28768 - 30018 (+)
Type: TC
Location: 28768 - 30018 (+)
Gene ID: opera_contig_110543_27
Type: STP
Location: 30317 - 31615 (-)
Type: STP
Location: 30317 - 31615 (-)
Gene ID: opera_contig_110543_28
Type: STP
Location: 31638 - 32588 (-)
Type: STP
Location: 31638 - 32588 (-)
Gene ID: opera_contig_110543_29
Type: TC
Location: 32601 - 33866 (-)
Type: TC
Location: 32601 - 33866 (-)
Gene ID: opera_contig_110543_30
Type: TC
Location: 33900 - 35174 (-)
Type: TC
Location: 33900 - 35174 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Pediococcus
Species
Pediococcus acidilactici_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.