Cluster: SPMP65_bin.7_CGC14
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate: host glycan/beta-glucan
- Genome ID: SPMP65_bin.7
- CGC Family ID: CGCFAM_00012
- Continent: Asia
- Source Study: Gounot et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | opera_contig_110542 | opera_contig_110542_69 | 83156 | 84610 | - | GH1 |
| pfam | opera_contig_110542 | opera_contig_110542_70 | 84626 | 84961 | - | PTS_IIA |
| TC | opera_contig_110542 | opera_contig_110542_71 | 84996 | 86222 | - | 4.A.3.2.2 |
| pfam | opera_contig_110542 | opera_contig_110542_72 | 86246 | 86548 | - | PTS_IIB |
| CAZyme | opera_contig_110542 | opera_contig_110542_73 | 86877 | 89201 | - | GH63 |
Gene ID: opera_contig_110542_69
Type: CAZyme
Location: 83156 - 84610 (-)
Type: CAZyme
Location: 83156 - 84610 (-)
Gene ID: opera_contig_110542_70
Type: pfam
Location: 84626 - 84961 (-)
Type: pfam
Location: 84626 - 84961 (-)
Gene ID: opera_contig_110542_71
Type: TC
Location: 84996 - 86222 (-)
Type: TC
Location: 84996 - 86222 (-)
Gene ID: opera_contig_110542_72
Type: pfam
Location: 86246 - 86548 (-)
Type: pfam
Location: 86246 - 86548 (-)
Gene ID: opera_contig_110542_73
Type: CAZyme
Location: 86877 - 89201 (-)
Type: CAZyme
Location: 86877 - 89201 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Pediococcus
Species
Pediococcus acidilactici_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.