Cluster: SPMP65_bin.7_CGC13
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: SPMP65_bin.7
- Continent: Asia
- Source Study: Gounot et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | opera_contig_110542 | opera_contig_110542_53 | 68536 | 69852 | - | 1.I.1.1.3 |
| pfam | opera_contig_110542 | opera_contig_110542_54 | 69859 | 70866 | - | GFO_IDH_MocA |
| pfam | opera_contig_110542 | opera_contig_110542_55 | 71179 | 71559 | + | DUF4828 |
| CAZyme | opera_contig_110542 | opera_contig_110542_56 | 71584 | 72351 | - | GH25 |
| TC | opera_contig_110542 | opera_contig_110542_57 | 72470 | 73792 | + | 2.A.3.8.12 |
| pfam | opera_contig_110542 | opera_contig_110542_58 | 73826 | 74353 | + | VanZ |
| TC | opera_contig_110542 | opera_contig_110542_59 | 74544 | 76469 | - | 3.A.3.5.7 |
Gene ID: opera_contig_110542_53
Type: TC
Location: 68536 - 69852 (-)
Type: TC
Location: 68536 - 69852 (-)
Gene ID: opera_contig_110542_54
Type: pfam
Location: 69859 - 70866 (-)
Type: pfam
Location: 69859 - 70866 (-)
Gene ID: opera_contig_110542_55
Type: pfam
Location: 71179 - 71559 (+)
Type: pfam
Location: 71179 - 71559 (+)
Gene ID: opera_contig_110542_56
Type: CAZyme
Location: 71584 - 72351 (-)
Type: CAZyme
Location: 71584 - 72351 (-)
Gene ID: opera_contig_110542_57
Type: TC
Location: 72470 - 73792 (+)
Type: TC
Location: 72470 - 73792 (+)
Gene ID: opera_contig_110542_58
Type: pfam
Location: 73826 - 74353 (+)
Type: pfam
Location: 73826 - 74353 (+)
Gene ID: opera_contig_110542_59
Type: TC
Location: 74544 - 76469 (-)
Type: TC
Location: 74544 - 76469 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Pediococcus
Species
Pediococcus acidilactici_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.