Cluster: SPMP65_bin.7_CGC12
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: SPMP65_bin.7
- Continent: Asia
- Source Study: Gounot et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | opera_contig_110542 | opera_contig_110542_42 | 56598 | 57614 | - | GT4 |
| CAZyme | opera_contig_110542 | opera_contig_110542_43 | 57645 | 58832 | - | GT4 |
| peptidase | opera_contig_110542 | opera_contig_110542_44 | 58918 | 59691 | - | S33.UNW |
| TC | opera_contig_110542 | opera_contig_110542_45 | 59768 | 61492 | - | 8.A.7.1.1 |
| STP | opera_contig_110542 | opera_contig_110542_46 | 61492 | 61758 | - | PTS-HPr |
| NULL(UNKNOWN) | opera_contig_110542 | opera_contig_110542_47 | 61901 | 62089 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | opera_contig_110542 | opera_contig_110542_48 | 62305 | 64515 | + | 3.A.9.1.2 |
Gene ID: opera_contig_110542_42
Type: CAZyme
Location: 56598 - 57614 (-)
Type: CAZyme
Location: 56598 - 57614 (-)
Gene ID: opera_contig_110542_43
Type: CAZyme
Location: 57645 - 58832 (-)
Type: CAZyme
Location: 57645 - 58832 (-)
Gene ID: opera_contig_110542_44
Type: peptidase
Location: 58918 - 59691 (-)
Type: peptidase
Location: 58918 - 59691 (-)
Gene ID: opera_contig_110542_45
Type: TC
Location: 59768 - 61492 (-)
Type: TC
Location: 59768 - 61492 (-)
Gene ID: opera_contig_110542_46
Type: STP
Location: 61492 - 61758 (-)
Type: STP
Location: 61492 - 61758 (-)
Gene ID: opera_contig_110542_47
Type:
Location: 61901 - 62089 (-)
Type:
Location: 61901 - 62089 (-)
Gene ID: opera_contig_110542_48
Type: TC
Location: 62305 - 64515 (+)
Type: TC
Location: 62305 - 64515 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Pediococcus
Species
Pediococcus acidilactici_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.