Cluster: SPMP65_bin.7_CGC11
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 3
- Substrate:
- Genome ID: SPMP65_bin.7
- CGC Family ID: CGCFAM_02459
- Continent: Asia
- Source Study: Gounot et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | opera_contig_110542 | opera_contig_110542_2 | 1932 | 3641 | - | GH123 |
| peptidase | opera_contig_110542 | opera_contig_110542_3 | 3644 | 4540 | - | S09.UPW |
| CAZyme | opera_contig_110542 | opera_contig_110542_4 | 4608 | 5975 | - | GH1 |
| pfam | opera_contig_110542 | opera_contig_110542_5 | 5968 | 6852 | - | ROK |
| TC | opera_contig_110542 | opera_contig_110542_6 | 6875 | 8137 | - | 4.A.3.2.2 |
| CAZyme | opera_contig_110542 | opera_contig_110542_7 | 8245 | 10452 | - | GH3 |
| NULL(UNKNOWN) | opera_contig_110542 | opera_contig_110542_8 | 10418 | 10564 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | opera_contig_110542 | opera_contig_110542_9 | 10694 | 11611 | - | DHDPS |
| TC | opera_contig_110542 | opera_contig_110542_10 | 11626 | 13134 | - | 2.A.21.3.20 |
Gene ID: opera_contig_110542_2
Type: CAZyme
Location: 1932 - 3641 (-)
Type: CAZyme
Location: 1932 - 3641 (-)
Gene ID: opera_contig_110542_3
Type: peptidase
Location: 3644 - 4540 (-)
Type: peptidase
Location: 3644 - 4540 (-)
Gene ID: opera_contig_110542_4
Type: CAZyme
Location: 4608 - 5975 (-)
Type: CAZyme
Location: 4608 - 5975 (-)
Gene ID: opera_contig_110542_5
Type: pfam
Location: 5968 - 6852 (-)
Type: pfam
Location: 5968 - 6852 (-)
Gene ID: opera_contig_110542_6
Type: TC
Location: 6875 - 8137 (-)
Type: TC
Location: 6875 - 8137 (-)
Gene ID: opera_contig_110542_7
Type: CAZyme
Location: 8245 - 10452 (-)
Type: CAZyme
Location: 8245 - 10452 (-)
Gene ID: opera_contig_110542_8
Type:
Location: 10418 - 10564 (-)
Type:
Location: 10418 - 10564 (-)
Gene ID: opera_contig_110542_9
Type: pfam
Location: 10694 - 11611 (-)
Type: pfam
Location: 10694 - 11611 (-)
Gene ID: opera_contig_110542_10
Type: TC
Location: 11626 - 13134 (-)
Type: TC
Location: 11626 - 13134 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Pediococcus
Species
Pediococcus acidilactici_A
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.