Cluster: SPMP40_bin.50_CGC52
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: SPMP40_bin.50
- CGC Family ID: CGCFAM_00352
- Continent: Asia
- Source Study: Gounot et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | opera_contig_1005 | opera_contig_1005_4 | 3370 | 3837 | + | 9.B.27.3.3 |
| pfam | opera_contig_1005 | opera_contig_1005_5 | 3895 | 4566 | + | Methyltransf_30 |
| pfam | opera_contig_1005 | opera_contig_1005_6 | 4651 | 5511 | + | ZnuA |
| TC | opera_contig_1005 | opera_contig_1005_7 | 5483 | 6304 | + | 3.A.1.15.11 |
| TC | opera_contig_1005 | opera_contig_1005_8 | 6405 | 7124 | + | 9.B.186.1.3 |
| NULL(UNKNOWN) | opera_contig_1005 | opera_contig_1005_9 | 7489 | 7599 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | opera_contig_1005 | opera_contig_1005_10 | 7992 | 10379 | + | GH3 |
Gene ID: opera_contig_1005_4
Type: TC
Location: 3370 - 3837 (+)
Type: TC
Location: 3370 - 3837 (+)
Gene ID: opera_contig_1005_5
Type: pfam
Location: 3895 - 4566 (+)
Type: pfam
Location: 3895 - 4566 (+)
Gene ID: opera_contig_1005_6
Type: pfam
Location: 4651 - 5511 (+)
Type: pfam
Location: 4651 - 5511 (+)
Gene ID: opera_contig_1005_7
Type: TC
Location: 5483 - 6304 (+)
Type: TC
Location: 5483 - 6304 (+)
Gene ID: opera_contig_1005_8
Type: TC
Location: 6405 - 7124 (+)
Type: TC
Location: 6405 - 7124 (+)
Gene ID: opera_contig_1005_9
Type:
Location: 7489 - 7599 (-)
Type:
Location: 7489 - 7599 (-)
Gene ID: opera_contig_1005_10
Type: CAZyme
Location: 7992 - 10379 (+)
Type: CAZyme
Location: 7992 - 10379 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.