Cluster: SPMP40_bin.50_CGC49
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 9
- Substrate:
- Genome ID: SPMP40_bin.50
- CGC Family ID: CGCFAM_01908
- Continent: Asia
- Source Study: Gounot et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | opera_contig_271 | opera_contig_271_16 | 16417 | 17088 | - | 9.B.18.1.1 |
| CAZyme | opera_contig_271 | opera_contig_271_17 | 17076 | 18191 | - | GT4 |
| CAZyme | opera_contig_271 | opera_contig_271_18 | 18228 | 19454 | - | GT4 |
| CAZyme | opera_contig_271 | opera_contig_271_19 | 19587 | 20735 | - | GT4 |
| pfam | opera_contig_271 | opera_contig_271_20 | 20775 | 21413 | - | Hexapep | Hexapep_2 |
| NULL(UNKNOWN) | opera_contig_271 | opera_contig_271_21 | 21397 | 22713 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | opera_contig_271 | opera_contig_271_22 | 22723 | 23709 | - | GT2 |
| CAZyme | opera_contig_271 | opera_contig_271_23 | 23721 | 24593 | - | GT11 |
| CAZyme | opera_contig_271 | opera_contig_271_24 | 24608 | 25546 | - | GT8 |
| pfam | opera_contig_271 | opera_contig_271_25 | 25548 | 26507 | - | Glycos_transf_2 |
| CAZyme | opera_contig_271 | opera_contig_271_26 | 26513 | 27484 | - | GT2 |
| CAZyme | opera_contig_271 | opera_contig_271_27 | 27477 | 28496 | - | GT2 |
| CAZyme | opera_contig_271 | opera_contig_271_28 | 28506 | 29432 | - | GT2 |
Gene ID: opera_contig_271_16
Type: TC
Location: 16417 - 17088 (-)
Type: TC
Location: 16417 - 17088 (-)
Gene ID: opera_contig_271_17
Type: CAZyme
Location: 17076 - 18191 (-)
Type: CAZyme
Location: 17076 - 18191 (-)
Gene ID: opera_contig_271_18
Type: CAZyme
Location: 18228 - 19454 (-)
Type: CAZyme
Location: 18228 - 19454 (-)
Gene ID: opera_contig_271_19
Type: CAZyme
Location: 19587 - 20735 (-)
Type: CAZyme
Location: 19587 - 20735 (-)
Gene ID: opera_contig_271_20
Type: pfam
Location: 20775 - 21413 (-)
Type: pfam
Location: 20775 - 21413 (-)
Gene ID: opera_contig_271_21
Type:
Location: 21397 - 22713 (-)
Type:
Location: 21397 - 22713 (-)
Gene ID: opera_contig_271_22
Type: CAZyme
Location: 22723 - 23709 (-)
Type: CAZyme
Location: 22723 - 23709 (-)
Gene ID: opera_contig_271_23
Type: CAZyme
Location: 23721 - 24593 (-)
Type: CAZyme
Location: 23721 - 24593 (-)
Gene ID: opera_contig_271_24
Type: CAZyme
Location: 24608 - 25546 (-)
Type: CAZyme
Location: 24608 - 25546 (-)
Gene ID: opera_contig_271_25
Type: pfam
Location: 25548 - 26507 (-)
Type: pfam
Location: 25548 - 26507 (-)
Gene ID: opera_contig_271_26
Type: CAZyme
Location: 26513 - 27484 (-)
Type: CAZyme
Location: 26513 - 27484 (-)
Gene ID: opera_contig_271_27
Type: CAZyme
Location: 27477 - 28496 (-)
Type: CAZyme
Location: 27477 - 28496 (-)
Gene ID: opera_contig_271_28
Type: CAZyme
Location: 28506 - 29432 (-)
Type: CAZyme
Location: 28506 - 29432 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.