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Cluster: SPMP40_bin.50_CGC39

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme opera_contig_80 opera_contig_80_23 24993 27641 + GH2
STP opera_contig_80 opera_contig_80_24 27935 28876 - PfkB
pfam opera_contig_80 opera_contig_80_25 28956 29894 - PAP2_3
TC opera_contig_80 opera_contig_80_26 29908 30591 - 4.F.1.3.2
pfam opera_contig_80 opera_contig_80_27 30557 31042 - GtrA_DPMS_TM
pfam opera_contig_80 opera_contig_80_28 31084 31563 - PgpA
TC opera_contig_80 opera_contig_80_29 31800 34442 + 1.B.14.6.14
pfam opera_contig_80 opera_contig_80_30 34819 36156 + OEP | OEP
TC opera_contig_80 opera_contig_80_31 36169 37245 + 8.A.1.1.2
Gene ID: opera_contig_80_23
Type: CAZyme
Location: 24993 - 27641 (+)
Gene ID: opera_contig_80_24
Type: STP
Location: 27935 - 28876 (-)
Gene ID: opera_contig_80_25
Type: pfam
Location: 28956 - 29894 (-)
Gene ID: opera_contig_80_26
Type: TC
Location: 29908 - 30591 (-)
Gene ID: opera_contig_80_27
Type: pfam
Location: 30557 - 31042 (-)
Gene ID: opera_contig_80_28
Type: pfam
Location: 31084 - 31563 (-)
Gene ID: opera_contig_80_29
Type: TC
Location: 31800 - 34442 (+)
Gene ID: opera_contig_80_30
Type: pfam
Location: 34819 - 36156 (+)
Gene ID: opera_contig_80_31
Type: TC
Location: 36169 - 37245 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Phocaeicola
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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