Cluster: SPMP40_bin.50_CGC35
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 3
- Substrate:
- Genome ID: SPMP40_bin.50
- CGC Family ID: CGCFAM_09598
- Continent: Asia
- Source Study: Gounot et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | opera_contig_68 | opera_contig_68_43 | 51248 | 52054 | - | 1.A.1.24.5 |
| CAZyme | opera_contig_68 | opera_contig_68_44 | 52551 | 54518 | + | GH20 |
| NULL(UNKNOWN) | opera_contig_68 | opera_contig_68_45 | 54559 | 55212 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | opera_contig_68 | opera_contig_68_46 | 55169 | 56395 | + | RE_HpaII |
| TC | opera_contig_68 | opera_contig_68_47 | 56392 | 57594 | + | 2.A.1.35.1 |
| NULL(UNKNOWN) | opera_contig_68 | opera_contig_68_48 | 57715 | 60114 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | opera_contig_68 | opera_contig_68_49 | 60133 | 61827 | - | GH13_38 |
| pfam | opera_contig_68 | opera_contig_68_50 | 61837 | 62652 | - | Patatin |
| pfam | opera_contig_68 | opera_contig_68_51 | 62771 | 63529 | + | Methyltransf_4 | Methyltransf_25 | Methyltransf_31 |
| TC | opera_contig_68 | opera_contig_68_52 | 63610 | 64710 | + | 3.A.1.132.3 |
| CAZyme | opera_contig_68 | opera_contig_68_53 | 65017 | 67911 | - | GH2 |
Gene ID: opera_contig_68_43
Type: TC
Location: 51248 - 52054 (-)
Type: TC
Location: 51248 - 52054 (-)
Gene ID: opera_contig_68_44
Type: CAZyme
Location: 52551 - 54518 (+)
Type: CAZyme
Location: 52551 - 54518 (+)
Gene ID: opera_contig_68_45
Type:
Location: 54559 - 55212 (+)
Type:
Location: 54559 - 55212 (+)
Gene ID: opera_contig_68_46
Type: pfam
Location: 55169 - 56395 (+)
Type: pfam
Location: 55169 - 56395 (+)
Gene ID: opera_contig_68_47
Type: TC
Location: 56392 - 57594 (+)
Type: TC
Location: 56392 - 57594 (+)
Gene ID: opera_contig_68_48
Type:
Location: 57715 - 60114 (-)
Type:
Location: 57715 - 60114 (-)
Gene ID: opera_contig_68_49
Type: CAZyme
Location: 60133 - 61827 (-)
Type: CAZyme
Location: 60133 - 61827 (-)
Gene ID: opera_contig_68_50
Type: pfam
Location: 61837 - 62652 (-)
Type: pfam
Location: 61837 - 62652 (-)
Gene ID: opera_contig_68_51
Type: pfam
Location: 62771 - 63529 (+)
Type: pfam
Location: 62771 - 63529 (+)
Gene ID: opera_contig_68_52
Type: TC
Location: 63610 - 64710 (+)
Type: TC
Location: 63610 - 64710 (+)
Gene ID: opera_contig_68_53
Type: CAZyme
Location: 65017 - 67911 (-)
Type: CAZyme
Location: 65017 - 67911 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.