Cluster: SPMP40_bin.50_CGC30
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate: pectin/galactan/beta-glucan/xylan/beta-mannan/host glycan
- Genome ID: SPMP40_bin.50
- CGC Family ID: CGCFAM_00001
- Continent: Asia
- Source Study: Gounot et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | opera_contig_47 | opera_contig_47_53 | 69720 | 71111 | + | GH29 |
| CAZyme | opera_contig_47 | opera_contig_47_54 | 71117 | 73453 | + | GH3 |
| NULL(UNKNOWN) | opera_contig_47 | opera_contig_47_55 | 73755 | 73856 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | opera_contig_47 | opera_contig_47_56 | 74099 | 78034 | - | HTH_AraC |
| TC | opera_contig_47 | opera_contig_47_57 | 78335 | 81493 | + | 1.B.14.6.1 |
| pfam | opera_contig_47 | opera_contig_47_58 | 81518 | 83389 | + | SusD_RagB | SusD-like_3 |
| CAZyme | opera_contig_47 | opera_contig_47_59 | 83527 | 85818 | + | GH20 |
Gene ID: opera_contig_47_53
Type: CAZyme
Location: 69720 - 71111 (+)
Type: CAZyme
Location: 69720 - 71111 (+)
Gene ID: opera_contig_47_54
Type: CAZyme
Location: 71117 - 73453 (+)
Type: CAZyme
Location: 71117 - 73453 (+)
Gene ID: opera_contig_47_55
Type:
Location: 73755 - 73856 (+)
Type:
Location: 73755 - 73856 (+)
Gene ID: opera_contig_47_56
Type: TF
Location: 74099 - 78034 (-)
Type: TF
Location: 74099 - 78034 (-)
Gene ID: opera_contig_47_57
Type: TC
Location: 78335 - 81493 (+)
Type: TC
Location: 78335 - 81493 (+)
Gene ID: opera_contig_47_58
Type: pfam
Location: 81518 - 83389 (+)
Type: pfam
Location: 81518 - 83389 (+)
Gene ID: opera_contig_47_59
Type: CAZyme
Location: 83527 - 85818 (+)
Type: CAZyme
Location: 83527 - 85818 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.