Cluster: SPMP40_bin.50_CGC25
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: SPMP40_bin.50
- CGC Family ID: CGCFAM_00059
- Continent: Asia
- Source Study: Gounot et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | opera_contig_29 | opera_contig_29_73 | 81251 | 83368 | + | 1.B.14.15.2 |
| STP | opera_contig_29 | opera_contig_29_74 | 83380 | 84201 | + | SBP_bac_3 |
| CAZyme | opera_contig_29 | opera_contig_29_75 | 84219 | 85208 | + | GH179 |
| pfam | opera_contig_29 | opera_contig_29_76 | 85214 | 86275 | + | DUF4421 |
| TC | opera_contig_29 | opera_contig_29_77 | 86366 | 87979 | - | 1.B.9.4.2 |
| NULL(UNKNOWN) | opera_contig_29 | opera_contig_29_78 | 88074 | 89252 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | opera_contig_29 | opera_contig_29_79 | 89619 | 90461 | + | PCMT | MTS | PrmA | Methyltransf_23 | Methyltransf_25 | Methyltransf_31 |
| TC | opera_contig_29 | opera_contig_29_80 | 90637 | 92520 | - | 8.A.46.2.2 |
| TC | opera_contig_29 | opera_contig_29_81 | 92543 | 95974 | - | 1.B.14.6.2 |
| NULL(UNKNOWN) | opera_contig_29 | opera_contig_29_82 | 96046 | 96513 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | opera_contig_29 | opera_contig_29_83 | 96701 | 99889 | + | 1.B.14.6.3 |
Gene ID: opera_contig_29_73
Type: TC
Location: 81251 - 83368 (+)
Type: TC
Location: 81251 - 83368 (+)
Gene ID: opera_contig_29_74
Type: STP
Location: 83380 - 84201 (+)
Type: STP
Location: 83380 - 84201 (+)
Gene ID: opera_contig_29_75
Type: CAZyme
Location: 84219 - 85208 (+)
Type: CAZyme
Location: 84219 - 85208 (+)
Gene ID: opera_contig_29_76
Type: pfam
Location: 85214 - 86275 (+)
Type: pfam
Location: 85214 - 86275 (+)
Gene ID: opera_contig_29_77
Type: TC
Location: 86366 - 87979 (-)
Type: TC
Location: 86366 - 87979 (-)
Gene ID: opera_contig_29_78
Type:
Location: 88074 - 89252 (-)
Type:
Location: 88074 - 89252 (-)
Gene ID: opera_contig_29_79
Type: pfam
Location: 89619 - 90461 (+)
Type: pfam
Location: 89619 - 90461 (+)
Gene ID: opera_contig_29_80
Type: TC
Location: 90637 - 92520 (-)
Type: TC
Location: 90637 - 92520 (-)
Gene ID: opera_contig_29_81
Type: TC
Location: 92543 - 95974 (-)
Type: TC
Location: 92543 - 95974 (-)
Gene ID: opera_contig_29_82
Type:
Location: 96046 - 96513 (+)
Type:
Location: 96046 - 96513 (+)
Gene ID: opera_contig_29_83
Type: TC
Location: 96701 - 99889 (+)
Type: TC
Location: 96701 - 99889 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.