Cluster: SPMP40_bin.50_CGC2
🧬 Cluster Details
- Gene Count: 16
- CAZyme Count: 3
- Substrate:
- Genome ID: SPMP40_bin.50
- Continent: Asia
- Source Study: Gounot et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | opera_contig_3 | opera_contig_3_76 | 101116 | 103146 | - | GH2 |
| TC | opera_contig_3 | opera_contig_3_77 | 103256 | 104254 | - | 2.A.4.7.7 |
| TC | opera_contig_3 | opera_contig_3_78 | 104531 | 108865 | + | 2.A.6.1.2 |
| pfam | opera_contig_3 | opera_contig_3_79 | 108885 | 109778 | + | HlyD_3 | HlyD_D23 |
| TC | opera_contig_3 | opera_contig_3_80 | 109791 | 110822 | + | 9.B.33.1.1 |
| TF | opera_contig_3 | opera_contig_3_81 | 110819 | 111583 | + | LytTR |
| TF | opera_contig_3 | opera_contig_3_82 | 112289 | 113176 | - | HTH_AraC | HTH_AraC |
| TC | opera_contig_3 | opera_contig_3_83 | 113316 | 114719 | + | 2.A.1.1.55 |
| pfam | opera_contig_3 | opera_contig_3_84 | 114763 | 118044 | + | TPR_8 | DUF5107 |
| CAZyme | opera_contig_3 | opera_contig_3_85 | 118092 | 120638 | + | GH116 |
| NULL(UNKNOWN) | opera_contig_3 | opera_contig_3_86 | 120677 | 120847 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| sulfatase | opera_contig_3 | opera_contig_3_87 | 121451 | 122602 | + | S1_8 |
| CAZyme | opera_contig_3 | opera_contig_3_88 | 122692 | 124881 | - | GH92 |
| pfam | opera_contig_3 | opera_contig_3_89 | 125025 | 125996 | - | Cupin_3 | PMI_typeI_cat | MPI_cupin_dom |
| pfam | opera_contig_3 | opera_contig_3_90 | 126220 | 127722 | + | GHL10 |
| TC | opera_contig_3 | opera_contig_3_91 | 128101 | 128811 | + | 1.B.44.2.11 |
Gene ID: opera_contig_3_76
Type: CAZyme
Location: 101116 - 103146 (-)
Type: CAZyme
Location: 101116 - 103146 (-)
Gene ID: opera_contig_3_77
Type: TC
Location: 103256 - 104254 (-)
Type: TC
Location: 103256 - 104254 (-)
Gene ID: opera_contig_3_78
Type: TC
Location: 104531 - 108865 (+)
Type: TC
Location: 104531 - 108865 (+)
Gene ID: opera_contig_3_79
Type: pfam
Location: 108885 - 109778 (+)
Type: pfam
Location: 108885 - 109778 (+)
Gene ID: opera_contig_3_80
Type: TC
Location: 109791 - 110822 (+)
Type: TC
Location: 109791 - 110822 (+)
Gene ID: opera_contig_3_81
Type: TF
Location: 110819 - 111583 (+)
Type: TF
Location: 110819 - 111583 (+)
Gene ID: opera_contig_3_82
Type: TF
Location: 112289 - 113176 (-)
Type: TF
Location: 112289 - 113176 (-)
Gene ID: opera_contig_3_83
Type: TC
Location: 113316 - 114719 (+)
Type: TC
Location: 113316 - 114719 (+)
Gene ID: opera_contig_3_84
Type: pfam
Location: 114763 - 118044 (+)
Type: pfam
Location: 114763 - 118044 (+)
Gene ID: opera_contig_3_85
Type: CAZyme
Location: 118092 - 120638 (+)
Type: CAZyme
Location: 118092 - 120638 (+)
Gene ID: opera_contig_3_86
Type:
Location: 120677 - 120847 (-)
Type:
Location: 120677 - 120847 (-)
Gene ID: opera_contig_3_87
Type: sulfatase
Location: 121451 - 122602 (+)
Type: sulfatase
Location: 121451 - 122602 (+)
Gene ID: opera_contig_3_88
Type: CAZyme
Location: 122692 - 124881 (-)
Type: CAZyme
Location: 122692 - 124881 (-)
Gene ID: opera_contig_3_89
Type: pfam
Location: 125025 - 125996 (-)
Type: pfam
Location: 125025 - 125996 (-)
Gene ID: opera_contig_3_90
Type: pfam
Location: 126220 - 127722 (+)
Type: pfam
Location: 126220 - 127722 (+)
Gene ID: opera_contig_3_91
Type: TC
Location: 128101 - 128811 (+)
Type: TC
Location: 128101 - 128811 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.