Cluster: SPMP40_bin.50_CGC18
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 3
- Substrate:
- Genome ID: SPMP40_bin.50
- Continent: Asia
- Source Study: Gounot et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | opera_contig_10 | opera_contig_10_71 | 83042 | 83722 | - | 1.A.8.3.1 |
| TC | opera_contig_10 | opera_contig_10_72 | 84223 | 85881 | + | 4.C.1.1.4 |
| NULL(UNKNOWN) | opera_contig_10 | opera_contig_10_73 | 85888 | 87138 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | opera_contig_10 | opera_contig_10_74 | 87158 | 87745 | - | cNMP_binding |
| TC | opera_contig_10 | opera_contig_10_75 | 87762 | 88649 | - | 2.A.115.1.1 |
| CAZyme | opera_contig_10 | opera_contig_10_76 | 88929 | 90362 | - | GH43_2 |
| CAZyme | opera_contig_10 | opera_contig_10_77 | 90368 | 92728 | - | GH31_4 |
| NULL(UNKNOWN) | opera_contig_10 | opera_contig_10_78 | 93110 | 95389 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | opera_contig_10 | opera_contig_10_79 | 95442 | 96956 | - | GH125 |
| pfam | opera_contig_10 | opera_contig_10_80 | 96985 | 98757 | - | SusD_RagB | SusD-like_3 |
| TC | opera_contig_10 | opera_contig_10_81 | 98770 | 102150 | - | 1.B.14.6.1 |
Gene ID: opera_contig_10_71
Type: TC
Location: 83042 - 83722 (-)
Type: TC
Location: 83042 - 83722 (-)
Gene ID: opera_contig_10_72
Type: TC
Location: 84223 - 85881 (+)
Type: TC
Location: 84223 - 85881 (+)
Gene ID: opera_contig_10_73
Type:
Location: 85888 - 87138 (+)
Type:
Location: 85888 - 87138 (+)
Gene ID: opera_contig_10_74
Type: STP
Location: 87158 - 87745 (-)
Type: STP
Location: 87158 - 87745 (-)
Gene ID: opera_contig_10_75
Type: TC
Location: 87762 - 88649 (-)
Type: TC
Location: 87762 - 88649 (-)
Gene ID: opera_contig_10_76
Type: CAZyme
Location: 88929 - 90362 (-)
Type: CAZyme
Location: 88929 - 90362 (-)
Gene ID: opera_contig_10_77
Type: CAZyme
Location: 90368 - 92728 (-)
Type: CAZyme
Location: 90368 - 92728 (-)
Gene ID: opera_contig_10_78
Type:
Location: 93110 - 95389 (-)
Type:
Location: 93110 - 95389 (-)
Gene ID: opera_contig_10_79
Type: CAZyme
Location: 95442 - 96956 (-)
Type: CAZyme
Location: 95442 - 96956 (-)
Gene ID: opera_contig_10_80
Type: pfam
Location: 96985 - 98757 (-)
Type: pfam
Location: 96985 - 98757 (-)
Gene ID: opera_contig_10_81
Type: TC
Location: 98770 - 102150 (-)
Type: TC
Location: 98770 - 102150 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.