Cluster: SPMP40_bin.50_CGC17
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: SPMP40_bin.50
- CGC Family ID: CGCFAM_00755
- Continent: Asia
- Source Study: Gounot et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | opera_contig_10 | opera_contig_10_48 | 58912 | 60408 | - | 3.A.1.15.11 |
| CAZyme | opera_contig_10 | opera_contig_10_49 | 60446 | 62443 | - | GH13_14 |
| pfam | opera_contig_10 | opera_contig_10_50 | 62464 | 63030 | - | RuvC |
| pfam | opera_contig_10 | opera_contig_10_51 | 63027 | 63332 | - | DUF4286 |
| TC | opera_contig_10 | opera_contig_10_52 | 63474 | 65147 | + | 4.C.1.1.4 |
Gene ID: opera_contig_10_48
Type: TC
Location: 58912 - 60408 (-)
Type: TC
Location: 58912 - 60408 (-)
Gene ID: opera_contig_10_49
Type: CAZyme
Location: 60446 - 62443 (-)
Type: CAZyme
Location: 60446 - 62443 (-)
Gene ID: opera_contig_10_50
Type: pfam
Location: 62464 - 63030 (-)
Type: pfam
Location: 62464 - 63030 (-)
Gene ID: opera_contig_10_51
Type: pfam
Location: 63027 - 63332 (-)
Type: pfam
Location: 63027 - 63332 (-)
Gene ID: opera_contig_10_52
Type: TC
Location: 63474 - 65147 (+)
Type: TC
Location: 63474 - 65147 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Phocaeicola
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| opera_contig_10_50 | vegetarian > vegan | 1.64001 | 0.03337 |