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Cluster: SPMP40_bin.50_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC opera_contig_3 opera_contig_3_60 82137 83843 + 3.A.3.7.2
TC opera_contig_3 opera_contig_3_61 83934 85967 + 3.A.3.7.2
TC opera_contig_3 opera_contig_3_62 85988 86563 + 3.A.3.7.2
NULL(UNKNOWN) opera_contig_3 opera_contig_3_63 86729 87496 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme opera_contig_3 opera_contig_3_64 87755 90019 + GT20
CAZyme opera_contig_3 opera_contig_3_65 90071 91858 + GH15
pfam opera_contig_3 opera_contig_3_66 91872 92999 + KdpD
TC opera_contig_3 opera_contig_3_67 93016 94491 + 2.A.21.9.1
Gene ID: opera_contig_3_60
Type: TC
Location: 82137 - 83843 (+)
Gene ID: opera_contig_3_61
Type: TC
Location: 83934 - 85967 (+)
Gene ID: opera_contig_3_62
Type: TC
Location: 85988 - 86563 (+)
Gene ID: opera_contig_3_63
Type:
Location: 86729 - 87496 (+)
Gene ID: opera_contig_3_64
Type: CAZyme
Location: 87755 - 90019 (+)
Gene ID: opera_contig_3_65
Type: CAZyme
Location: 90071 - 91858 (+)
Gene ID: opera_contig_3_66
Type: pfam
Location: 91872 - 92999 (+)
Gene ID: opera_contig_3_67
Type: TC
Location: 93016 - 94491 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacteroidota
→
Class
Bacteroidia
→
Order
Bacteroidales
→
Family
Bacteroidaceae
→
Genus
Phocaeicola
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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