dbCAN HGM

Cluster: SPMP06_bin.48_CGC61

Cluster Details
Gene Composition
Taxonomic Lineage
Gene level Read Mapping
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🧬 Cluster Details

Gene Count: 26
CAZyme Count: 9
Substrate:
Genome ID: SPMP06_bin.48
CGC Family ID: CGCFAM_11296
Continent: Asia
Source Study: Gounot et al., 2022 →

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
CAZyme	opera_contig_191941	opera_contig_191941_175	249787	251748	-	GH20
NULL(UNKNOWN)	opera_contig_191941	opera_contig_191941_176	251805	251912	+	NULL(UNKNOWN) [View Structural Homologs]
CAZyme	opera_contig_191941	opera_contig_191941_177	252043	254256	+	GH84
NULL(UNKNOWN)	opera_contig_191941	opera_contig_191941_178	254533	254667	-	NULL(UNKNOWN) [View Structural Homologs]
TF	opera_contig_191941	opera_contig_191941_179	254901	255794	-	HTH_AraC \| HTH_AraC
CAZyme	opera_contig_191941	opera_contig_191941_180	255982	258783	+	GH2
TC	opera_contig_191941	opera_contig_191941_181	258865	260247	+	2.A.1.1.55
pfam	opera_contig_191941	opera_contig_191941_182	260394	263675	+	TPR_8 \| TPR_11 \| TPR_16 \| TPR_16 \| DUF5107
sulfatase	opera_contig_191941	opera_contig_191941_183	263815	265008	-	S1_8
TC	opera_contig_191941	opera_contig_191941_184	265487	268666	+	1.B.14.6.1
pfam	opera_contig_191941	opera_contig_191941_185	268679	270415	+	SusD_RagB \| SusD-like_3
CAZyme	opera_contig_191941	opera_contig_191941_186	270542	273382	-	GH3
TF	opera_contig_191941	opera_contig_191941_187	274106	278035	+	HTH_AraC
TC	opera_contig_191941	opera_contig_191941_188	278293	281412	+	1.B.14.6.1
pfam	opera_contig_191941	opera_contig_191941_189	281419	283302	+	SusD_RagB \| SusD-like_3
pfam	opera_contig_191941	opera_contig_191941_190	283292	284740	+	F5_F8_type_C \| BT_3987-like_N \| BT_3987-like_N
CAZyme	opera_contig_191941	opera_contig_191941_191	284772	287630	+	CBM32
NULL(UNKNOWN)	opera_contig_191941	opera_contig_191941_192	287645	289348	+	NULL(UNKNOWN) [View Structural Homologs]
CAZyme	opera_contig_191941	opera_contig_191941_193	289351	291657	+	GH3
CAZyme	opera_contig_191941	opera_contig_191941_194	291700	293139	+	GH43_2
CAZyme	opera_contig_191941	opera_contig_191941_195	293204	294547	+	GH29
STP	opera_contig_191941	opera_contig_191941_196	294599	295162	+	cNMP_binding
TC	opera_contig_191941	opera_contig_191941_197	295275	296429	+	9.B.97.3.1
pfam	opera_contig_191941	opera_contig_191941_198	296468	297844	-	DUF4419
pfam	opera_contig_191941	opera_contig_191941_199	298054	299145	+	IMS \| IMS_HHH \| IMS_C \| IMS_HHH_1
CAZyme	opera_contig_191941	opera_contig_191941_200	299394	301328	+	PL33_1

Gene ID: opera_contig_191941_175
Type: CAZyme
Location: 249787 - 251748 (-)

Gene ID: opera_contig_191941_176
Type:
Location: 251805 - 251912 (+)

Gene ID: opera_contig_191941_177
Type: CAZyme
Location: 252043 - 254256 (+)

Gene ID: opera_contig_191941_178
Type:
Location: 254533 - 254667 (-)

Gene ID: opera_contig_191941_179
Type: TF
Location: 254901 - 255794 (-)

Gene ID: opera_contig_191941_180
Type: CAZyme
Location: 255982 - 258783 (+)

Gene ID: opera_contig_191941_181
Type: TC
Location: 258865 - 260247 (+)

Gene ID: opera_contig_191941_182
Type: pfam
Location: 260394 - 263675 (+)

Gene ID: opera_contig_191941_183
Type: sulfatase
Location: 263815 - 265008 (-)

Gene ID: opera_contig_191941_184
Type: TC
Location: 265487 - 268666 (+)

Gene ID: opera_contig_191941_185
Type: pfam
Location: 268679 - 270415 (+)

Gene ID: opera_contig_191941_186
Type: CAZyme
Location: 270542 - 273382 (-)

Gene ID: opera_contig_191941_187
Type: TF
Location: 274106 - 278035 (+)

Gene ID: opera_contig_191941_188
Type: TC
Location: 278293 - 281412 (+)

Gene ID: opera_contig_191941_189
Type: pfam
Location: 281419 - 283302 (+)

Gene ID: opera_contig_191941_190
Type: pfam
Location: 283292 - 284740 (+)

Gene ID: opera_contig_191941_191
Type: CAZyme
Location: 284772 - 287630 (+)

Gene ID: opera_contig_191941_192
Type:
Location: 287645 - 289348 (+)

Gene ID: opera_contig_191941_193
Type: CAZyme
Location: 289351 - 291657 (+)

Gene ID: opera_contig_191941_194
Type: CAZyme
Location: 291700 - 293139 (+)

Gene ID: opera_contig_191941_195
Type: CAZyme
Location: 293204 - 294547 (+)

Gene ID: opera_contig_191941_196
Type: STP
Location: 294599 - 295162 (+)

Gene ID: opera_contig_191941_197
Type: TC
Location: 295275 - 296429 (+)

Gene ID: opera_contig_191941_198
Type: pfam
Location: 296468 - 297844 (-)

Gene ID: opera_contig_191941_199
Type: pfam
Location: 298054 - 299145 (+)

Gene ID: opera_contig_191941_200
Type: CAZyme
Location: 299394 - 301328 (+)

Taxonomic Lineage

Domain

Bacteria

→

Phylum

Bacteroidota

→

Class

Bacteroidia

→

Order

Bacteroidales

→

Family

Bacteroidaceae

→

Genus

Bacteroides

→

Species

Bacteroides caccae

Gene Level Read Mapping

Diet (De Filippis et al., 2019)
Diet (Huang et al., 2024)
IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID	Condition Pair	log2FC	FDR P-value
opera_contig_191941_176	vegan > omnivore	1.08603	0.01246
opera_contig_191941_181	vegan > omnivore	1.02448	0.00455
opera_contig_191941_183	vegan > omnivore	1.21358	0.00671
opera_contig_191941_184	vegan > omnivore	1.02774	0.01246
opera_contig_191941_189	vegan > omnivore	1.06136	0.01246
opera_contig_191941_190	vegan > omnivore	1.09980	0.01246
opera_contig_191941_191	vegan > omnivore	1.10046	0.01246
opera_contig_191941_195	vegan > omnivore	1.12663	0.01246

Gene ID	Condition Pair	log2FC	FDR P-value
opera_contig_191941_185	omnivore > flexitarian	1.23258	0.00455
opera_contig_191941_189	omnivore > flexitarian	1.21552	0.00455
opera_contig_191941_190	omnivore > flexitarian	1.10543	0.00455
opera_contig_191941_191	omnivore > flexitarian	1.21942	0.00455
opera_contig_191941_192	omnivore > flexitarian	1.22074	0.00455
opera_contig_191941_193	omnivore > flexitarian	1.31781	0.00455
opera_contig_191941_195	omnivore > flexitarian	1.16845	0.00455

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