Cluster: SPMP06_bin.48_CGC6
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 6
- Substrate:
- Genome ID: SPMP06_bin.48
- CGC Family ID: CGCFAM_11052
- Continent: Asia
- Source Study: Gounot et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | opera_contig_191936 | opera_contig_191936_85 | 130764 | 133010 | - | GH3 |
| TF | opera_contig_191936 | opera_contig_191936_86 | 133198 | 137211 | + | HTH_AraC |
| CAZyme | opera_contig_191936 | opera_contig_191936_87 | 137297 | 138841 | - | GH109 |
| CAZyme | opera_contig_191936 | opera_contig_191936_88 | 138874 | 140682 | - | PL35 |
| pfam | opera_contig_191936 | opera_contig_191936_89 | 140768 | 142303 | - | Peptidase_M60 | M60-like_N |
| CAZyme | opera_contig_191936 | opera_contig_191936_90 | 142476 | 145376 | - | CBM32 |
| pfam | opera_contig_191936 | opera_contig_191936_91 | 145412 | 147313 | - | SusD_RagB | SusD-like_3 |
| TC | opera_contig_191936 | opera_contig_191936_92 | 147322 | 150519 | - | 1.B.14.6.1 |
| CAZyme | opera_contig_191936 | opera_contig_191936_93 | 150846 | 152147 | + | GH88 |
| CAZyme | opera_contig_191936 | opera_contig_191936_94 | 152166 | 153437 | + | GH154 |
Gene ID: opera_contig_191936_85
Type: CAZyme
Location: 130764 - 133010 (-)
Type: CAZyme
Location: 130764 - 133010 (-)
Gene ID: opera_contig_191936_86
Type: TF
Location: 133198 - 137211 (+)
Type: TF
Location: 133198 - 137211 (+)
Gene ID: opera_contig_191936_87
Type: CAZyme
Location: 137297 - 138841 (-)
Type: CAZyme
Location: 137297 - 138841 (-)
Gene ID: opera_contig_191936_88
Type: CAZyme
Location: 138874 - 140682 (-)
Type: CAZyme
Location: 138874 - 140682 (-)
Gene ID: opera_contig_191936_89
Type: pfam
Location: 140768 - 142303 (-)
Type: pfam
Location: 140768 - 142303 (-)
Gene ID: opera_contig_191936_90
Type: CAZyme
Location: 142476 - 145376 (-)
Type: CAZyme
Location: 142476 - 145376 (-)
Gene ID: opera_contig_191936_91
Type: pfam
Location: 145412 - 147313 (-)
Type: pfam
Location: 145412 - 147313 (-)
Gene ID: opera_contig_191936_92
Type: TC
Location: 147322 - 150519 (-)
Type: TC
Location: 147322 - 150519 (-)
Gene ID: opera_contig_191936_93
Type: CAZyme
Location: 150846 - 152147 (+)
Type: CAZyme
Location: 150846 - 152147 (+)
Gene ID: opera_contig_191936_94
Type: CAZyme
Location: 152166 - 153437 (+)
Type: CAZyme
Location: 152166 - 153437 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides caccae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| opera_contig_191936_94 | vegan > omnivore | 1.16462 | 0.01246 |