Cluster: SPMP06_bin.48_CGC58
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 6
- Substrate: host glycan
- Genome ID: SPMP06_bin.48
- CGC Family ID: CGCFAM_00720
- Continent: Asia
- Source Study: Gounot et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | opera_contig_191941 | opera_contig_191941_11 | 14755 | 15657 | + | 2.A.7.3.57 |
| pfam | opera_contig_191941 | opera_contig_191941_12 | 15704 | 16354 | + | DUF3256 |
| pfam | opera_contig_191941 | opera_contig_191941_13 | 16380 | 17468 | - | APH |
| CAZyme | opera_contig_191941 | opera_contig_191941_14 | 17498 | 20893 | - | GH2 |
| TC | opera_contig_191941 | opera_contig_191941_15 | 20924 | 21814 | - | 2.A.115.1.1 |
| CAZyme | opera_contig_191941 | opera_contig_191941_16 | 21924 | 23336 | - | GH109 |
| CAZyme | opera_contig_191941 | opera_contig_191941_17 | 23742 | 26141 | - | CBM32 |
| CAZyme | opera_contig_191941 | opera_contig_191941_18 | 26248 | 28908 | - | CBM32 |
| pfam | opera_contig_191941 | opera_contig_191941_19 | 28980 | 30392 | - | F5_F8_type_C | BT_3987-like_N | BT_3987-like_N |
| pfam | opera_contig_191941 | opera_contig_191941_20 | 30414 | 32345 | - | SusD_RagB | SusD-like_3 |
| TC | opera_contig_191941 | opera_contig_191941_21 | 32372 | 35707 | - | 1.B.14.6.1 |
| STP | opera_contig_191941 | opera_contig_191941_22 | 35743 | 36681 | - | FecR |
| STP | opera_contig_191941 | opera_contig_191941_23 | 36903 | 37604 | + | FecR |
| TC | opera_contig_191941 | opera_contig_191941_24 | 37664 | 41038 | + | 1.B.14.6.1 |
| pfam | opera_contig_191941 | opera_contig_191941_25 | 41059 | 42966 | + | SusD_RagB | SusD-like_3 |
| CAZyme | opera_contig_191941 | opera_contig_191941_26 | 42987 | 43904 | + | CBM32 |
| CAZyme | opera_contig_191941 | opera_contig_191941_27 | 44023 | 46899 | + | CBM32 |
Gene ID: opera_contig_191941_11
Type: TC
Location: 14755 - 15657 (+)
Type: TC
Location: 14755 - 15657 (+)
Gene ID: opera_contig_191941_12
Type: pfam
Location: 15704 - 16354 (+)
Type: pfam
Location: 15704 - 16354 (+)
Gene ID: opera_contig_191941_13
Type: pfam
Location: 16380 - 17468 (-)
Type: pfam
Location: 16380 - 17468 (-)
Gene ID: opera_contig_191941_14
Type: CAZyme
Location: 17498 - 20893 (-)
Type: CAZyme
Location: 17498 - 20893 (-)
Gene ID: opera_contig_191941_15
Type: TC
Location: 20924 - 21814 (-)
Type: TC
Location: 20924 - 21814 (-)
Gene ID: opera_contig_191941_16
Type: CAZyme
Location: 21924 - 23336 (-)
Type: CAZyme
Location: 21924 - 23336 (-)
Gene ID: opera_contig_191941_17
Type: CAZyme
Location: 23742 - 26141 (-)
Type: CAZyme
Location: 23742 - 26141 (-)
Gene ID: opera_contig_191941_18
Type: CAZyme
Location: 26248 - 28908 (-)
Type: CAZyme
Location: 26248 - 28908 (-)
Gene ID: opera_contig_191941_19
Type: pfam
Location: 28980 - 30392 (-)
Type: pfam
Location: 28980 - 30392 (-)
Gene ID: opera_contig_191941_20
Type: pfam
Location: 30414 - 32345 (-)
Type: pfam
Location: 30414 - 32345 (-)
Gene ID: opera_contig_191941_21
Type: TC
Location: 32372 - 35707 (-)
Type: TC
Location: 32372 - 35707 (-)
Gene ID: opera_contig_191941_22
Type: STP
Location: 35743 - 36681 (-)
Type: STP
Location: 35743 - 36681 (-)
Gene ID: opera_contig_191941_23
Type: STP
Location: 36903 - 37604 (+)
Type: STP
Location: 36903 - 37604 (+)
Gene ID: opera_contig_191941_24
Type: TC
Location: 37664 - 41038 (+)
Type: TC
Location: 37664 - 41038 (+)
Gene ID: opera_contig_191941_25
Type: pfam
Location: 41059 - 42966 (+)
Type: pfam
Location: 41059 - 42966 (+)
Gene ID: opera_contig_191941_26
Type: CAZyme
Location: 42987 - 43904 (+)
Type: CAZyme
Location: 42987 - 43904 (+)
Gene ID: opera_contig_191941_27
Type: CAZyme
Location: 44023 - 46899 (+)
Type: CAZyme
Location: 44023 - 46899 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides caccae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| opera_contig_191941_17 | vegan > omnivore | 1.15617 | 0.01246 |
| opera_contig_191941_18 | vegan > omnivore | 1.24499 | 0.01246 |
| opera_contig_191941_25 | vegan > omnivore | 1.15365 | 0.01246 |