Cluster: SPMP06_bin.48_CGC45
🧬 Cluster Details
- Gene Count: 25
- CAZyme Count: 6
- Substrate:
- Genome ID: SPMP06_bin.48
- Continent: Asia
- Source Study: Gounot et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | opera_contig_191938 | opera_contig_191938_387 | 476051 | 477178 | + | GT94 |
| CAZyme | opera_contig_191938 | opera_contig_191938_388 | 477231 | 478436 | + | GT4 |
| TC | opera_contig_191938 | opera_contig_191938_389 | 478433 | 479887 | + | 2.A.66.2.23 |
| NULL(UNKNOWN) | opera_contig_191938 | opera_contig_191938_390 | 479927 | 481057 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | opera_contig_191938 | opera_contig_191938_391 | 481088 | 482245 | + | GT4 |
| CAZyme | opera_contig_191938 | opera_contig_191938_392 | 482248 | 483105 | + | GT2 |
| pfam | opera_contig_191938 | opera_contig_191938_393 | 483119 | 483898 | + | MetW | Methyltransf_11 | Methyltransf_23 |
| CAZyme | opera_contig_191938 | opera_contig_191938_394 | 484050 | 485264 | + | GT2 |
| STP | opera_contig_191938 | opera_contig_191938_395 | 485327 | 488035 | + | HATPase_c | HisKA | Response_reg |
| pfam | opera_contig_191938 | opera_contig_191938_396 | 488057 | 489157 | + | Exo_endo_phos |
| TC | opera_contig_191938 | opera_contig_191938_397 | 489267 | 492548 | - | 1.B.14.6.3 |
| TC | opera_contig_191938 | opera_contig_191938_398 | 492788 | 494479 | - | 3.A.1.120.6 |
| STP | opera_contig_191938 | opera_contig_191938_399 | 494897 | 495172 | + | GyrI-like |
| TC | opera_contig_191938 | opera_contig_191938_400 | 495217 | 497037 | - | 2.A.21.9.2 |
| peptidase | opera_contig_191938 | opera_contig_191938_401 | 497338 | 498723 | - | S09.UPW |
| TC | opera_contig_191938 | opera_contig_191938_402 | 498814 | 500169 | + | 2.A.66.1.13 |
| TC | opera_contig_191938 | opera_contig_191938_403 | 500318 | 501034 | + | 9.B.186.1.3 |
| CAZyme | opera_contig_191938 | opera_contig_191938_404 | 501012 | 501749 | + | GT51 |
| STP | opera_contig_191938 | opera_contig_191938_405 | 501820 | 502323 | - | Sigma70_r2 | Sigma70_r4_2 |
| pfam | opera_contig_191938 | opera_contig_191938_406 | 502563 | 503123 | + | LemA |
| TC | opera_contig_191938 | opera_contig_191938_407 | 503168 | 504130 | + | 9.B.1.1.5 |
| pfam | opera_contig_191938 | opera_contig_191938_408 | 504259 | 504753 | + | DUF4251 |
| TC | opera_contig_191938 | opera_contig_191938_409 | 504769 | 505410 | - | 1.A.62.2.1 |
| pfam | opera_contig_191938 | opera_contig_191938_410 | 505503 | 506588 | + | Epimerase_2 |
| TC | opera_contig_191938 | opera_contig_191938_411 | 506997 | 509573 | + | 1.B.14.6.14 |
Gene ID: opera_contig_191938_387
Type: CAZyme
Location: 476051 - 477178 (+)
Type: CAZyme
Location: 476051 - 477178 (+)
Gene ID: opera_contig_191938_388
Type: CAZyme
Location: 477231 - 478436 (+)
Type: CAZyme
Location: 477231 - 478436 (+)
Gene ID: opera_contig_191938_389
Type: TC
Location: 478433 - 479887 (+)
Type: TC
Location: 478433 - 479887 (+)
Gene ID: opera_contig_191938_390
Type:
Location: 479927 - 481057 (+)
Type:
Location: 479927 - 481057 (+)
Gene ID: opera_contig_191938_391
Type: CAZyme
Location: 481088 - 482245 (+)
Type: CAZyme
Location: 481088 - 482245 (+)
Gene ID: opera_contig_191938_392
Type: CAZyme
Location: 482248 - 483105 (+)
Type: CAZyme
Location: 482248 - 483105 (+)
Gene ID: opera_contig_191938_393
Type: pfam
Location: 483119 - 483898 (+)
Type: pfam
Location: 483119 - 483898 (+)
Gene ID: opera_contig_191938_394
Type: CAZyme
Location: 484050 - 485264 (+)
Type: CAZyme
Location: 484050 - 485264 (+)
Gene ID: opera_contig_191938_395
Type: STP
Location: 485327 - 488035 (+)
Type: STP
Location: 485327 - 488035 (+)
Gene ID: opera_contig_191938_396
Type: pfam
Location: 488057 - 489157 (+)
Type: pfam
Location: 488057 - 489157 (+)
Gene ID: opera_contig_191938_397
Type: TC
Location: 489267 - 492548 (-)
Type: TC
Location: 489267 - 492548 (-)
Gene ID: opera_contig_191938_398
Type: TC
Location: 492788 - 494479 (-)
Type: TC
Location: 492788 - 494479 (-)
Gene ID: opera_contig_191938_399
Type: STP
Location: 494897 - 495172 (+)
Type: STP
Location: 494897 - 495172 (+)
Gene ID: opera_contig_191938_400
Type: TC
Location: 495217 - 497037 (-)
Type: TC
Location: 495217 - 497037 (-)
Gene ID: opera_contig_191938_401
Type: peptidase
Location: 497338 - 498723 (-)
Type: peptidase
Location: 497338 - 498723 (-)
Gene ID: opera_contig_191938_402
Type: TC
Location: 498814 - 500169 (+)
Type: TC
Location: 498814 - 500169 (+)
Gene ID: opera_contig_191938_403
Type: TC
Location: 500318 - 501034 (+)
Type: TC
Location: 500318 - 501034 (+)
Gene ID: opera_contig_191938_404
Type: CAZyme
Location: 501012 - 501749 (+)
Type: CAZyme
Location: 501012 - 501749 (+)
Gene ID: opera_contig_191938_405
Type: STP
Location: 501820 - 502323 (-)
Type: STP
Location: 501820 - 502323 (-)
Gene ID: opera_contig_191938_406
Type: pfam
Location: 502563 - 503123 (+)
Type: pfam
Location: 502563 - 503123 (+)
Gene ID: opera_contig_191938_407
Type: TC
Location: 503168 - 504130 (+)
Type: TC
Location: 503168 - 504130 (+)
Gene ID: opera_contig_191938_408
Type: pfam
Location: 504259 - 504753 (+)
Type: pfam
Location: 504259 - 504753 (+)
Gene ID: opera_contig_191938_409
Type: TC
Location: 504769 - 505410 (-)
Type: TC
Location: 504769 - 505410 (-)
Gene ID: opera_contig_191938_410
Type: pfam
Location: 505503 - 506588 (+)
Type: pfam
Location: 505503 - 506588 (+)
Gene ID: opera_contig_191938_411
Type: TC
Location: 506997 - 509573 (+)
Type: TC
Location: 506997 - 509573 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides caccae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.