Cluster: SPMP06_bin.48_CGC30
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 12
- Substrate:
- Genome ID: SPMP06_bin.48
- CGC Family ID: CGCFAM_00217
- Continent: Asia
- Source Study: Gounot et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | opera_contig_191937 | opera_contig_191937_357 | 453347 | 454480 | - | GH105 |
| CAZyme | opera_contig_191937 | opera_contig_191937_358 | 454485 | 455780 | - | PL42 |
| CAZyme | opera_contig_191937 | opera_contig_191937_359 | 455796 | 456818 | - | GH43_24 |
| CAZyme | opera_contig_191937 | opera_contig_191937_360 | 456846 | 458102 | - | GH154 |
| CAZyme | opera_contig_191937 | opera_contig_191937_361 | 458226 | 460133 | - | GH16_3 | GH43_24 |
| CAZyme | opera_contig_191937 | opera_contig_191937_362 | 460150 | 461685 | - | GH16_3 |
| CAZyme | opera_contig_191937 | opera_contig_191937_363 | 461704 | 462597 | - | CBM32 |
| pfam | opera_contig_191937 | opera_contig_191937_364 | 462626 | 464263 | - | SusD_RagB | SusD-like_3 |
| TC | opera_contig_191937 | opera_contig_191937_365 | 464292 | 467306 | - | 1.B.14.6.1 |
| pfam | opera_contig_191937 | opera_contig_191937_366 | 467339 | 469267 | - | SusD_RagB | SusD-like_3 |
| TC | opera_contig_191937 | opera_contig_191937_367 | 469286 | 472417 | - | 1.B.14.6.1 |
| TF | opera_contig_191937 | opera_contig_191937_368 | 472667 | 476911 | - | HTH_AraC |
| CAZyme | opera_contig_191937 | opera_contig_191937_369 | 477022 | 478026 | + | GH43_34 |
| CAZyme | opera_contig_191937 | opera_contig_191937_370 | 478412 | 480439 | - | GH97 |
| CAZyme | opera_contig_191937 | opera_contig_191937_371 | 480452 | 482911 | - | GH51_2 |
| CAZyme | opera_contig_191937 | opera_contig_191937_372 | 483104 | 484069 | - | GH43_19 |
| CAZyme | opera_contig_191937 | opera_contig_191937_373 | 484104 | 486440 | - | GH35 |
Gene ID: opera_contig_191937_357
Type: CAZyme
Location: 453347 - 454480 (-)
Type: CAZyme
Location: 453347 - 454480 (-)
Gene ID: opera_contig_191937_358
Type: CAZyme
Location: 454485 - 455780 (-)
Type: CAZyme
Location: 454485 - 455780 (-)
Gene ID: opera_contig_191937_359
Type: CAZyme
Location: 455796 - 456818 (-)
Type: CAZyme
Location: 455796 - 456818 (-)
Gene ID: opera_contig_191937_360
Type: CAZyme
Location: 456846 - 458102 (-)
Type: CAZyme
Location: 456846 - 458102 (-)
Gene ID: opera_contig_191937_361
Type: CAZyme
Location: 458226 - 460133 (-)
Type: CAZyme
Location: 458226 - 460133 (-)
Gene ID: opera_contig_191937_362
Type: CAZyme
Location: 460150 - 461685 (-)
Type: CAZyme
Location: 460150 - 461685 (-)
Gene ID: opera_contig_191937_363
Type: CAZyme
Location: 461704 - 462597 (-)
Type: CAZyme
Location: 461704 - 462597 (-)
Gene ID: opera_contig_191937_364
Type: pfam
Location: 462626 - 464263 (-)
Type: pfam
Location: 462626 - 464263 (-)
Gene ID: opera_contig_191937_365
Type: TC
Location: 464292 - 467306 (-)
Type: TC
Location: 464292 - 467306 (-)
Gene ID: opera_contig_191937_366
Type: pfam
Location: 467339 - 469267 (-)
Type: pfam
Location: 467339 - 469267 (-)
Gene ID: opera_contig_191937_367
Type: TC
Location: 469286 - 472417 (-)
Type: TC
Location: 469286 - 472417 (-)
Gene ID: opera_contig_191937_368
Type: TF
Location: 472667 - 476911 (-)
Type: TF
Location: 472667 - 476911 (-)
Gene ID: opera_contig_191937_369
Type: CAZyme
Location: 477022 - 478026 (+)
Type: CAZyme
Location: 477022 - 478026 (+)
Gene ID: opera_contig_191937_370
Type: CAZyme
Location: 478412 - 480439 (-)
Type: CAZyme
Location: 478412 - 480439 (-)
Gene ID: opera_contig_191937_371
Type: CAZyme
Location: 480452 - 482911 (-)
Type: CAZyme
Location: 480452 - 482911 (-)
Gene ID: opera_contig_191937_372
Type: CAZyme
Location: 483104 - 484069 (-)
Type: CAZyme
Location: 483104 - 484069 (-)
Gene ID: opera_contig_191937_373
Type: CAZyme
Location: 484104 - 486440 (-)
Type: CAZyme
Location: 484104 - 486440 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides caccae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| opera_contig_191937_358 | vegan > omnivore | 1.05452 | 0.01246 |
| opera_contig_191937_363 | vegan > omnivore | 1.17741 | 0.01246 |
| opera_contig_191937_364 | vegan > omnivore | 1.09001 | 0.01246 |
| opera_contig_191937_365 | vegan > omnivore | 1.29180 | 0.01246 |
| opera_contig_191937_366 | vegan > omnivore | 1.21697 | 0.01246 |