Cluster: SPMP06_bin.48_CGC27
🧬 Cluster Details
- Gene Count: 14
- CAZyme Count: 4
- Substrate:
- Genome ID: SPMP06_bin.48
- CGC Family ID: CGCFAM_00363
- Continent: Asia
- Source Study: Gounot et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | opera_contig_191937 | opera_contig_191937_120 | 172723 | 174018 | + | GH23 |
| STP | opera_contig_191937 | opera_contig_191937_121 | 174091 | 176337 | + | HD |
| TF | opera_contig_191937 | opera_contig_191937_122 | 176377 | 176721 | - | MerR |
| TC | opera_contig_191937 | opera_contig_191937_123 | 176746 | 177714 | - | 1.A.34.1.3 |
| pfam | opera_contig_191937 | opera_contig_191937_124 | 177821 | 180439 | + | tRNA-synt_2c | DHHA1 | tRNA_SAD |
| CAZyme | opera_contig_191937 | opera_contig_191937_125 | 180760 | 182997 | + | GH92 |
| TF | opera_contig_191937 | opera_contig_191937_126 | 183026 | 183580 | + | GerE |
| STP | opera_contig_191937 | opera_contig_191937_127 | 183656 | 184624 | + | FecR |
| CAZyme | opera_contig_191937 | opera_contig_191937_128 | 184663 | 186939 | + | GH92 |
| CAZyme | opera_contig_191937 | opera_contig_191937_129 | 186975 | 189245 | + | GH92 |
| pfam | opera_contig_191937 | opera_contig_191937_130 | 189419 | 189853 | + | DUF6078 |
| NULL(UNKNOWN) | opera_contig_191937 | opera_contig_191937_131 | 189804 | 190019 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | opera_contig_191937 | opera_contig_191937_132 | 190159 | 193545 | + | 1.B.14.6.2 |
| TC | opera_contig_191937 | opera_contig_191937_133 | 193566 | 195290 | + | 8.A.46.2.2 |
Gene ID: opera_contig_191937_120
Type: CAZyme
Location: 172723 - 174018 (+)
Type: CAZyme
Location: 172723 - 174018 (+)
Gene ID: opera_contig_191937_121
Type: STP
Location: 174091 - 176337 (+)
Type: STP
Location: 174091 - 176337 (+)
Gene ID: opera_contig_191937_122
Type: TF
Location: 176377 - 176721 (-)
Type: TF
Location: 176377 - 176721 (-)
Gene ID: opera_contig_191937_123
Type: TC
Location: 176746 - 177714 (-)
Type: TC
Location: 176746 - 177714 (-)
Gene ID: opera_contig_191937_124
Type: pfam
Location: 177821 - 180439 (+)
Type: pfam
Location: 177821 - 180439 (+)
Gene ID: opera_contig_191937_125
Type: CAZyme
Location: 180760 - 182997 (+)
Type: CAZyme
Location: 180760 - 182997 (+)
Gene ID: opera_contig_191937_126
Type: TF
Location: 183026 - 183580 (+)
Type: TF
Location: 183026 - 183580 (+)
Gene ID: opera_contig_191937_127
Type: STP
Location: 183656 - 184624 (+)
Type: STP
Location: 183656 - 184624 (+)
Gene ID: opera_contig_191937_128
Type: CAZyme
Location: 184663 - 186939 (+)
Type: CAZyme
Location: 184663 - 186939 (+)
Gene ID: opera_contig_191937_129
Type: CAZyme
Location: 186975 - 189245 (+)
Type: CAZyme
Location: 186975 - 189245 (+)
Gene ID: opera_contig_191937_130
Type: pfam
Location: 189419 - 189853 (+)
Type: pfam
Location: 189419 - 189853 (+)
Gene ID: opera_contig_191937_131
Type:
Location: 189804 - 190019 (-)
Type:
Location: 189804 - 190019 (-)
Gene ID: opera_contig_191937_132
Type: TC
Location: 190159 - 193545 (+)
Type: TC
Location: 190159 - 193545 (+)
Gene ID: opera_contig_191937_133
Type: TC
Location: 193566 - 195290 (+)
Type: TC
Location: 193566 - 195290 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides caccae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| opera_contig_191937_131 | vegan > omnivore | 1.07212 | 0.01246 |