Cluster: SPMP06_bin.48_CGC14
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 3
- Substrate:
- Genome ID: SPMP06_bin.48
- CGC Family ID: CGCFAM_00158
- Continent: Asia
- Source Study: Gounot et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | opera_contig_191936 | opera_contig_191936_274 | 411633 | 412757 | + | 3.A.11.1.3 |
| STP | opera_contig_191936 | opera_contig_191936_275 | 413072 | 413686 | + | Sigma70_r2 | Sigma70_r4_2 |
| STP | opera_contig_191936 | opera_contig_191936_276 | 413835 | 414911 | + | FecR |
| TC | opera_contig_191936 | opera_contig_191936_277 | 415094 | 418468 | + | 1.B.14.6.1 |
| pfam | opera_contig_191936 | opera_contig_191936_278 | 418487 | 420394 | + | SusD_RagB | SusD-like_3 |
| NULL(UNKNOWN) | opera_contig_191936 | opera_contig_191936_279 | 420420 | 421337 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | opera_contig_191936 | opera_contig_191936_280 | 421443 | 424187 | + | CBM32 |
| NULL(UNKNOWN) | opera_contig_191936 | opera_contig_191936_281 | 424215 | 426689 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | opera_contig_191936 | opera_contig_191936_282 | 426699 | 427946 | + | GH29 |
| pfam | opera_contig_191936 | opera_contig_191936_283 | 428166 | 428504 | + | F5_F8_type_C |
| CAZyme | opera_contig_191936 | opera_contig_191936_284 | 428523 | 431507 | + | GH2 |
Gene ID: opera_contig_191936_274
Type: TC
Location: 411633 - 412757 (+)
Type: TC
Location: 411633 - 412757 (+)
Gene ID: opera_contig_191936_275
Type: STP
Location: 413072 - 413686 (+)
Type: STP
Location: 413072 - 413686 (+)
Gene ID: opera_contig_191936_276
Type: STP
Location: 413835 - 414911 (+)
Type: STP
Location: 413835 - 414911 (+)
Gene ID: opera_contig_191936_277
Type: TC
Location: 415094 - 418468 (+)
Type: TC
Location: 415094 - 418468 (+)
Gene ID: opera_contig_191936_278
Type: pfam
Location: 418487 - 420394 (+)
Type: pfam
Location: 418487 - 420394 (+)
Gene ID: opera_contig_191936_279
Type:
Location: 420420 - 421337 (+)
Type:
Location: 420420 - 421337 (+)
Gene ID: opera_contig_191936_280
Type: CAZyme
Location: 421443 - 424187 (+)
Type: CAZyme
Location: 421443 - 424187 (+)
Gene ID: opera_contig_191936_281
Type:
Location: 424215 - 426689 (+)
Type:
Location: 424215 - 426689 (+)
Gene ID: opera_contig_191936_282
Type: CAZyme
Location: 426699 - 427946 (+)
Type: CAZyme
Location: 426699 - 427946 (+)
Gene ID: opera_contig_191936_283
Type: pfam
Location: 428166 - 428504 (+)
Type: pfam
Location: 428166 - 428504 (+)
Gene ID: opera_contig_191936_284
Type: CAZyme
Location: 428523 - 431507 (+)
Type: CAZyme
Location: 428523 - 431507 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides caccae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| opera_contig_191936_275 | vegan > omnivore | 3.56980 | 0.01246 |
| opera_contig_191936_275 | vegetarian > omnivore | 2.58575 | 0.01185 |
| opera_contig_191936_276 | vegan > omnivore | 3.20399 | 0.01060 |
| opera_contig_191936_276 | vegetarian > omnivore | 1.87643 | 0.02740 |
| opera_contig_191936_277 | vegan > omnivore | 2.25389 | 0.01246 |
| opera_contig_191936_281 | vegan > omnivore | 3.20414 | 0.00671 |
| opera_contig_191936_281 | vegetarian > omnivore | 2.12470 | 0.02058 |
| opera_contig_191936_283 | vegan > omnivore | 3.40920 | 0.01246 |
| opera_contig_191936_284 | vegan > omnivore | 1.02598 | 0.01246 |