Cluster: SPMP06_bin.48_CGC10
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 4
- Substrate:
- Genome ID: SPMP06_bin.48
- CGC Family ID: CGCFAM_00158
- Continent: Asia
- Source Study: Gounot et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | opera_contig_191936 | opera_contig_191936_200 | 290381 | 293302 | - | CBM32 |
| sulfatase | opera_contig_191936 | opera_contig_191936_201 | 293333 | 295009 | - | S1_8 |
| pfam | opera_contig_191936 | opera_contig_191936_202 | 295091 | 297016 | - | SusD_RagB | SusD-like_3 |
| TC | opera_contig_191936 | opera_contig_191936_203 | 297023 | 300427 | - | 1.B.14.6.1 |
| STP | opera_contig_191936 | opera_contig_191936_204 | 300667 | 301221 | - | Sigma70_r2 | Sigma70_r4_2 |
| CAZyme | opera_contig_191936 | opera_contig_191936_205 | 301426 | 302931 | - | GH29 |
| STP | opera_contig_191936 | opera_contig_191936_206 | 303186 | 304283 | - | FecR |
| CAZyme | opera_contig_191936 | opera_contig_191936_207 | 304991 | 308281 | + | GH2 |
| sulfatase | opera_contig_191936 | opera_contig_191936_208 | 309136 | 310686 | - | S1_15 |
| CAZyme | opera_contig_191936 | opera_contig_191936_209 | 310783 | 313593 | - | CBM32 |
Gene ID: opera_contig_191936_200
Type: CAZyme
Location: 290381 - 293302 (-)
Type: CAZyme
Location: 290381 - 293302 (-)
Gene ID: opera_contig_191936_201
Type: sulfatase
Location: 293333 - 295009 (-)
Type: sulfatase
Location: 293333 - 295009 (-)
Gene ID: opera_contig_191936_202
Type: pfam
Location: 295091 - 297016 (-)
Type: pfam
Location: 295091 - 297016 (-)
Gene ID: opera_contig_191936_203
Type: TC
Location: 297023 - 300427 (-)
Type: TC
Location: 297023 - 300427 (-)
Gene ID: opera_contig_191936_204
Type: STP
Location: 300667 - 301221 (-)
Type: STP
Location: 300667 - 301221 (-)
Gene ID: opera_contig_191936_205
Type: CAZyme
Location: 301426 - 302931 (-)
Type: CAZyme
Location: 301426 - 302931 (-)
Gene ID: opera_contig_191936_206
Type: STP
Location: 303186 - 304283 (-)
Type: STP
Location: 303186 - 304283 (-)
Gene ID: opera_contig_191936_207
Type: CAZyme
Location: 304991 - 308281 (+)
Type: CAZyme
Location: 304991 - 308281 (+)
Gene ID: opera_contig_191936_208
Type: sulfatase
Location: 309136 - 310686 (-)
Type: sulfatase
Location: 309136 - 310686 (-)
Gene ID: opera_contig_191936_209
Type: CAZyme
Location: 310783 - 313593 (-)
Type: CAZyme
Location: 310783 - 313593 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Species
Bacteroides caccae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| opera_contig_191936_200 | vegan > omnivore | 1.38942 | 0.01246 |
| opera_contig_191936_201 | vegan > omnivore | 1.33259 | 0.01246 |
| opera_contig_191936_204 | vegan > omnivore | 1.16623 | 0.01246 |