Cluster: SPMP06_bin.115_CGC25
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: SPMP06_bin.115
- CGC Family ID: CGCFAM_00242
- Continent: Asia
- Source Study: Gounot et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | opera_contig_193823 | opera_contig_193823_142 | 175647 | 177803 | - | GH112 |
| pfam | opera_contig_193823 | opera_contig_193823_143 | 177875 | 178054 | - | DUF6903 |
| TC | opera_contig_193823 | opera_contig_193823_144 | 178067 | 178960 | - | 3.A.1.1.18 |
| TC | opera_contig_193823 | opera_contig_193823_145 | 178976 | 179866 | - | 3.A.1.1.20 |
| STP | opera_contig_193823 | opera_contig_193823_146 | 179983 | 181404 | - | SBP_bac_1 |
| TF | opera_contig_193823 | opera_contig_193823_147 | 181659 | 182498 | + | HTH_AraC | HTH_AraC |
| TC | opera_contig_193823 | opera_contig_193823_148 | 182509 | 183861 | - | 2.A.66.1.45 |
| TC | opera_contig_193823 | opera_contig_193823_149 | 183869 | 184594 | - | 3.A.1.12.3 |
| TC | opera_contig_193823 | opera_contig_193823_150 | 184672 | 185607 | - | 3.A.1.12.8 |
| TC | opera_contig_193823 | opera_contig_193823_151 | 185707 | 186360 | - | 3.A.1.12.4 |
Gene ID: opera_contig_193823_142
Type: CAZyme
Location: 175647 - 177803 (-)
Type: CAZyme
Location: 175647 - 177803 (-)
Gene ID: opera_contig_193823_143
Type: pfam
Location: 177875 - 178054 (-)
Type: pfam
Location: 177875 - 178054 (-)
Gene ID: opera_contig_193823_144
Type: TC
Location: 178067 - 178960 (-)
Type: TC
Location: 178067 - 178960 (-)
Gene ID: opera_contig_193823_145
Type: TC
Location: 178976 - 179866 (-)
Type: TC
Location: 178976 - 179866 (-)
Gene ID: opera_contig_193823_146
Type: STP
Location: 179983 - 181404 (-)
Type: STP
Location: 179983 - 181404 (-)
Gene ID: opera_contig_193823_147
Type: TF
Location: 181659 - 182498 (+)
Type: TF
Location: 181659 - 182498 (+)
Gene ID: opera_contig_193823_148
Type: TC
Location: 182509 - 183861 (-)
Type: TC
Location: 182509 - 183861 (-)
Gene ID: opera_contig_193823_149
Type: TC
Location: 183869 - 184594 (-)
Type: TC
Location: 183869 - 184594 (-)
Gene ID: opera_contig_193823_150
Type: TC
Location: 184672 - 185607 (-)
Type: TC
Location: 184672 - 185607 (-)
Gene ID: opera_contig_193823_151
Type: TC
Location: 185707 - 186360 (-)
Type: TC
Location: 185707 - 186360 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Species
Mediterraneibacter torques
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.