Cluster: SPMP06_bin.115_CGC22
🧬 Cluster Details
- Gene Count: 18
- CAZyme Count: 12
- Substrate:
- Genome ID: SPMP06_bin.115
- CGC Family ID: CGCFAM_01528
- Continent: Asia
- Source Study: Gounot et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | opera_contig_193823 | opera_contig_193823_1 | 497 | 1426 | - | GT2 |
| NULL(UNKNOWN) | opera_contig_193823 | opera_contig_193823_2 | 1513 | 1962 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | opera_contig_193823 | opera_contig_193823_3 | 2037 | 2606 | - | Acyl_transf_3 |
| CAZyme | opera_contig_193823 | opera_contig_193823_4 | 2634 | 3614 | - | GT2 |
| CAZyme | opera_contig_193823 | opera_contig_193823_5 | 3604 | 4575 | - | GT2 |
| NULL(UNKNOWN) | opera_contig_193823 | opera_contig_193823_6 | 4581 | 6110 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | opera_contig_193823 | opera_contig_193823_7 | 6119 | 7285 | - | PS_pyruv_trans |
| CAZyme | opera_contig_193823 | opera_contig_193823_8 | 7297 | 8274 | - | GT2 |
| CAZyme | opera_contig_193823 | opera_contig_193823_9 | 8258 | 9208 | - | GT2 |
| CAZyme | opera_contig_193823 | opera_contig_193823_10 | 9187 | 10176 | - | GT2 |
| CAZyme | opera_contig_193823 | opera_contig_193823_11 | 10195 | 11169 | - | GT2 |
| CAZyme | opera_contig_193823 | opera_contig_193823_12 | 11182 | 12192 | - | GT2 |
| CAZyme | opera_contig_193823 | opera_contig_193823_13 | 12209 | 13402 | - | GT4 |
| CAZyme | opera_contig_193823 | opera_contig_193823_14 | 13399 | 14109 | - | GT32 |
| pfam | opera_contig_193823 | opera_contig_193823_15 | 14124 | 15206 | - | EpsG |
| CAZyme | opera_contig_193823 | opera_contig_193823_16 | 15227 | 16033 | - | GT2 |
| CAZyme | opera_contig_193823 | opera_contig_193823_17 | 16014 | 17141 | - | GT4 |
| TC | opera_contig_193823 | opera_contig_193823_18 | 17161 | 18531 | - | 2.A.35.2.1 |
Gene ID: opera_contig_193823_1
Type: CAZyme
Location: 497 - 1426 (-)
Type: CAZyme
Location: 497 - 1426 (-)
Gene ID: opera_contig_193823_2
Type:
Location: 1513 - 1962 (-)
Type:
Location: 1513 - 1962 (-)
Gene ID: opera_contig_193823_3
Type: pfam
Location: 2037 - 2606 (-)
Type: pfam
Location: 2037 - 2606 (-)
Gene ID: opera_contig_193823_4
Type: CAZyme
Location: 2634 - 3614 (-)
Type: CAZyme
Location: 2634 - 3614 (-)
Gene ID: opera_contig_193823_5
Type: CAZyme
Location: 3604 - 4575 (-)
Type: CAZyme
Location: 3604 - 4575 (-)
Gene ID: opera_contig_193823_6
Type:
Location: 4581 - 6110 (-)
Type:
Location: 4581 - 6110 (-)
Gene ID: opera_contig_193823_7
Type: pfam
Location: 6119 - 7285 (-)
Type: pfam
Location: 6119 - 7285 (-)
Gene ID: opera_contig_193823_8
Type: CAZyme
Location: 7297 - 8274 (-)
Type: CAZyme
Location: 7297 - 8274 (-)
Gene ID: opera_contig_193823_9
Type: CAZyme
Location: 8258 - 9208 (-)
Type: CAZyme
Location: 8258 - 9208 (-)
Gene ID: opera_contig_193823_10
Type: CAZyme
Location: 9187 - 10176 (-)
Type: CAZyme
Location: 9187 - 10176 (-)
Gene ID: opera_contig_193823_11
Type: CAZyme
Location: 10195 - 11169 (-)
Type: CAZyme
Location: 10195 - 11169 (-)
Gene ID: opera_contig_193823_12
Type: CAZyme
Location: 11182 - 12192 (-)
Type: CAZyme
Location: 11182 - 12192 (-)
Gene ID: opera_contig_193823_13
Type: CAZyme
Location: 12209 - 13402 (-)
Type: CAZyme
Location: 12209 - 13402 (-)
Gene ID: opera_contig_193823_14
Type: CAZyme
Location: 13399 - 14109 (-)
Type: CAZyme
Location: 13399 - 14109 (-)
Gene ID: opera_contig_193823_15
Type: pfam
Location: 14124 - 15206 (-)
Type: pfam
Location: 14124 - 15206 (-)
Gene ID: opera_contig_193823_16
Type: CAZyme
Location: 15227 - 16033 (-)
Type: CAZyme
Location: 15227 - 16033 (-)
Gene ID: opera_contig_193823_17
Type: CAZyme
Location: 16014 - 17141 (-)
Type: CAZyme
Location: 16014 - 17141 (-)
Gene ID: opera_contig_193823_18
Type: TC
Location: 17161 - 18531 (-)
Type: TC
Location: 17161 - 18531 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Species
Mediterraneibacter torques
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.