Cluster: SPMP06_bin.115_CGC15
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: SPMP06_bin.115
- Continent: Asia
- Source Study: Gounot et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | opera_contig_193821 | opera_contig_193821_456 | 507710 | 508423 | + | 3.A.1.122.7 |
| NULL(UNKNOWN) | opera_contig_193821 | opera_contig_193821_457 | 508410 | 510038 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | opera_contig_193821 | opera_contig_193821_458 | 510004 | 511425 | + | 3.A.1.122.2 |
| NULL(UNKNOWN) | opera_contig_193821 | opera_contig_193821_459 | 511535 | 511798 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | opera_contig_193821 | opera_contig_193821_460 | 512003 | 512467 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | opera_contig_193821 | opera_contig_193821_461 | 512464 | 513519 | + | 9.A.23.1.1 |
| pfam | opera_contig_193821 | opera_contig_193821_462 | 513610 | 514329 | + | RelA_SpoT |
| TF | opera_contig_193821 | opera_contig_193821_463 | 514430 | 514795 | + | HTH_5 |
| TC | opera_contig_193821 | opera_contig_193821_464 | 514900 | 516765 | + | 3.A.3.6.10 |
| STP | opera_contig_193821 | opera_contig_193821_465 | 516773 | 517357 | + | TPR_1 |
| pfam | opera_contig_193821 | opera_contig_193821_466 | 517511 | 518752 | + | MMR_HSR1 | GTP-bdg_N | GTP-bdg_M |
| CAZyme | opera_contig_193821 | opera_contig_193821_467 | 519056 | 524065 | + | CBM32 | CBM32 | CBM32 | GH20 |
Gene ID: opera_contig_193821_456
Type: TC
Location: 507710 - 508423 (+)
Type: TC
Location: 507710 - 508423 (+)
Gene ID: opera_contig_193821_457
Type:
Location: 508410 - 510038 (+)
Type:
Location: 508410 - 510038 (+)
Gene ID: opera_contig_193821_458
Type: TC
Location: 510004 - 511425 (+)
Type: TC
Location: 510004 - 511425 (+)
Gene ID: opera_contig_193821_459
Type:
Location: 511535 - 511798 (-)
Type:
Location: 511535 - 511798 (-)
Gene ID: opera_contig_193821_460
Type:
Location: 512003 - 512467 (+)
Type:
Location: 512003 - 512467 (+)
Gene ID: opera_contig_193821_461
Type: TC
Location: 512464 - 513519 (+)
Type: TC
Location: 512464 - 513519 (+)
Gene ID: opera_contig_193821_462
Type: pfam
Location: 513610 - 514329 (+)
Type: pfam
Location: 513610 - 514329 (+)
Gene ID: opera_contig_193821_463
Type: TF
Location: 514430 - 514795 (+)
Type: TF
Location: 514430 - 514795 (+)
Gene ID: opera_contig_193821_464
Type: TC
Location: 514900 - 516765 (+)
Type: TC
Location: 514900 - 516765 (+)
Gene ID: opera_contig_193821_465
Type: STP
Location: 516773 - 517357 (+)
Type: STP
Location: 516773 - 517357 (+)
Gene ID: opera_contig_193821_466
Type: pfam
Location: 517511 - 518752 (+)
Type: pfam
Location: 517511 - 518752 (+)
Gene ID: opera_contig_193821_467
Type: CAZyme
Location: 519056 - 524065 (+)
Type: CAZyme
Location: 519056 - 524065 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Species
Mediterraneibacter torques
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.