Cluster: SPMP06_bin.115_CGC1
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 3
- Substrate:
- Genome ID: SPMP06_bin.115
- CGC Family ID: CGCFAM_00055
- Continent: Asia
- Source Study: Gounot et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | opera_contig_193820 | opera_contig_193820_103 | 130531 | 134031 | + | CBM13 | CBM13 | CBM13 |
| CAZyme | opera_contig_193820 | opera_contig_193820_104 | 134028 | 135152 | + | CBM13 | GH73 |
| NULL(UNKNOWN) | opera_contig_193820 | opera_contig_193820_105 | 135152 | 135307 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | opera_contig_193820 | opera_contig_193820_106 | 135297 | 136100 | + | ABC2_membrane |
| TC | opera_contig_193820 | opera_contig_193820_107 | 136117 | 136872 | + | 3.A.1.103.5 |
| NULL(UNKNOWN) | opera_contig_193820 | opera_contig_193820_108 | 136909 | 137217 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | opera_contig_193820 | opera_contig_193820_109 | 137245 | 138291 | + | PS_pyruv_trans |
| CAZyme | opera_contig_193820 | opera_contig_193820_110 | 138305 | 139333 | + | GT2 |
Gene ID: opera_contig_193820_103
Type: CAZyme
Location: 130531 - 134031 (+)
Type: CAZyme
Location: 130531 - 134031 (+)
Gene ID: opera_contig_193820_104
Type: CAZyme
Location: 134028 - 135152 (+)
Type: CAZyme
Location: 134028 - 135152 (+)
Gene ID: opera_contig_193820_105
Type:
Location: 135152 - 135307 (+)
Type:
Location: 135152 - 135307 (+)
Gene ID: opera_contig_193820_106
Type: pfam
Location: 135297 - 136100 (+)
Type: pfam
Location: 135297 - 136100 (+)
Gene ID: opera_contig_193820_107
Type: TC
Location: 136117 - 136872 (+)
Type: TC
Location: 136117 - 136872 (+)
Gene ID: opera_contig_193820_108
Type:
Location: 136909 - 137217 (+)
Type:
Location: 136909 - 137217 (+)
Gene ID: opera_contig_193820_109
Type: pfam
Location: 137245 - 138291 (+)
Type: pfam
Location: 137245 - 138291 (+)
Gene ID: opera_contig_193820_110
Type: CAZyme
Location: 138305 - 139333 (+)
Type: CAZyme
Location: 138305 - 139333 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Lachnospirales
Family
Lachnospiraceae
Genus
Mediterraneibacter
Species
Mediterraneibacter torques
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.