Cluster: Rep_996_CGC47
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_996
- CGC Family ID: CGCFAM_05657
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_996_c_35 | Rep_996_c_35_20 | 20912 | 22471 | + | GH37 |
| TC | Rep_996_c_35 | Rep_996_c_35_21 | 22575 | 23528 | + | 3.A.1.17.2 |
| peptidase | Rep_996_c_35 | Rep_996_c_35_22 | 25125 | 25946 | - | S33.UPW |
| TC | Rep_996_c_35 | Rep_996_c_35_23 | 26185 | 27774 | + | 2.A.1.30.1 |
| TF | Rep_996_c_35 | Rep_996_c_35_24 | 27811 | 28719 | - | HTH_1 |
| pfam | Rep_996_c_35 | Rep_996_c_35_25 | 28852 | 29409 | + | ABM |
| TC | Rep_996_c_35 | Rep_996_c_35_26 | 29427 | 30371 | - | 9.B.34.1.4 |
Gene ID: Rep_996_c_35_20
Type: CAZyme
Location: 20912 - 22471 (+)
Type: CAZyme
Location: 20912 - 22471 (+)
Gene ID: Rep_996_c_35_21
Type: TC
Location: 22575 - 23528 (+)
Type: TC
Location: 22575 - 23528 (+)
Gene ID: Rep_996_c_35_22
Type: peptidase
Location: 25125 - 25946 (-)
Type: peptidase
Location: 25125 - 25946 (-)
Gene ID: Rep_996_c_35_23
Type: TC
Location: 26185 - 27774 (+)
Type: TC
Location: 26185 - 27774 (+)
Gene ID: Rep_996_c_35_24
Type: TF
Location: 27811 - 28719 (-)
Type: TF
Location: 27811 - 28719 (-)
Gene ID: Rep_996_c_35_25
Type: pfam
Location: 28852 - 29409 (+)
Type: pfam
Location: 28852 - 29409 (+)
Gene ID: Rep_996_c_35_26
Type: TC
Location: 29427 - 30371 (-)
Type: TC
Location: 29427 - 30371 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Pantoea
Species
Pantoea septica
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.