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Cluster: Rep_996_CGC28

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_996_c_26 Rep_996_c_26_27 30137 30856 + GT51
STP Rep_996_c_26 Rep_996_c_26_28 30860 31132 - PTS-HPr
pfam Rep_996_c_26 Rep_996_c_26_29 31129 31983 - RapZ-like_N | PapZ_C
TC Rep_996_c_26 Rep_996_c_26_30 32038 32517 - 4.A.2.1.4
pfam Rep_996_c_26 Rep_996_c_26_31 32674 32961 - Ribosomal_S30AE
pfam Rep_996_c_26 Rep_996_c_26_32 32983 34416 - Sigma54_AID | Sigma54_DBD | Sigma54_CBD
TC Rep_996_c_26 Rep_996_c_26_33 34464 35189 - 1.B.42.1.2
TC Rep_996_c_26 Rep_996_c_26_34 35195 35743 - 1.B.42.1.2
TC Rep_996_c_26 Rep_996_c_26_35 35712 36290 - 1.B.42.1.2
pfam Rep_996_c_26 Rep_996_c_26_36 36287 36853 - Hydrolase_3
STP Rep_996_c_26 Rep_996_c_26_37 36867 37853 - CBS | CBS | SIS
TC Rep_996_c_26 Rep_996_c_26_38 37871 38851 - 2.A.19.5.1
TC Rep_996_c_26 Rep_996_c_26_39 39077 39892 + 3.A.1.27.3
TC Rep_996_c_26 Rep_996_c_26_40 39897 40679 + 3.A.1.27.3
TC Rep_996_c_26 Rep_996_c_26_41 40684 41229 + 3.A.1.27.3
TC Rep_996_c_26 Rep_996_c_26_42 41243 41875 + 3.A.1.27.3
TC Rep_996_c_26 Rep_996_c_26_43 41878 42183 + 3.A.1.27.3
Gene ID: Rep_996_c_26_27
Type: CAZyme
Location: 30137 - 30856 (+)
Gene ID: Rep_996_c_26_28
Type: STP
Location: 30860 - 31132 (-)
Gene ID: Rep_996_c_26_29
Type: pfam
Location: 31129 - 31983 (-)
Gene ID: Rep_996_c_26_30
Type: TC
Location: 32038 - 32517 (-)
Gene ID: Rep_996_c_26_31
Type: pfam
Location: 32674 - 32961 (-)
Gene ID: Rep_996_c_26_32
Type: pfam
Location: 32983 - 34416 (-)
Gene ID: Rep_996_c_26_33
Type: TC
Location: 34464 - 35189 (-)
Gene ID: Rep_996_c_26_34
Type: TC
Location: 35195 - 35743 (-)
Gene ID: Rep_996_c_26_35
Type: TC
Location: 35712 - 36290 (-)
Gene ID: Rep_996_c_26_36
Type: pfam
Location: 36287 - 36853 (-)
Gene ID: Rep_996_c_26_37
Type: STP
Location: 36867 - 37853 (-)
Gene ID: Rep_996_c_26_38
Type: TC
Location: 37871 - 38851 (-)
Gene ID: Rep_996_c_26_39
Type: TC
Location: 39077 - 39892 (+)
Gene ID: Rep_996_c_26_40
Type: TC
Location: 39897 - 40679 (+)
Gene ID: Rep_996_c_26_41
Type: TC
Location: 40684 - 41229 (+)
Gene ID: Rep_996_c_26_42
Type: TC
Location: 41243 - 41875 (+)
Gene ID: Rep_996_c_26_43
Type: TC
Location: 41878 - 42183 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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