Cluster: Rep_996_CGC27
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_996
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_996_c_25 | Rep_996_c_25_72 | 77700 | 80561 | + | 9.B.34.1.2 |
| TF | Rep_996_c_25 | Rep_996_c_25_73 | 80558 | 81622 | - | LacI |
| TC | Rep_996_c_25 | Rep_996_c_25_74 | 81861 | 83171 | + | 2.A.1.14.2 |
| CAZyme | Rep_996_c_25 | Rep_996_c_25_75 | 83182 | 85542 | + | GH31_2 |
| pfam | Rep_996_c_25 | Rep_996_c_25_76 | 85706 | 86218 | - | Ferritin |
| TC | Rep_996_c_25 | Rep_996_c_25_77 | 86662 | 87333 | + | 9.A.5.4.2 |
| TC | Rep_996_c_25 | Rep_996_c_25_78 | 87323 | 87796 | + | 9.B.156.1.3 |
Gene ID: Rep_996_c_25_72
Type: TC
Location: 77700 - 80561 (+)
Type: TC
Location: 77700 - 80561 (+)
Gene ID: Rep_996_c_25_73
Type: TF
Location: 80558 - 81622 (-)
Type: TF
Location: 80558 - 81622 (-)
Gene ID: Rep_996_c_25_74
Type: TC
Location: 81861 - 83171 (+)
Type: TC
Location: 81861 - 83171 (+)
Gene ID: Rep_996_c_25_75
Type: CAZyme
Location: 83182 - 85542 (+)
Type: CAZyme
Location: 83182 - 85542 (+)
Gene ID: Rep_996_c_25_76
Type: pfam
Location: 85706 - 86218 (-)
Type: pfam
Location: 85706 - 86218 (-)
Gene ID: Rep_996_c_25_77
Type: TC
Location: 86662 - 87333 (+)
Type: TC
Location: 86662 - 87333 (+)
Gene ID: Rep_996_c_25_78
Type: TC
Location: 87323 - 87796 (+)
Type: TC
Location: 87323 - 87796 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Pantoea
Species
Pantoea septica
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.