Cluster: Rep_996_CGC23
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_996
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_996_c_22 | Rep_996_c_22_43 | 49034 | 50023 | + | GT2 |
| pfam | Rep_996_c_22 | Rep_996_c_22_44 | 50026 | 51315 | + | Polysacc_synt | Polysacc_synt_3 |
| CAZyme | Rep_996_c_22 | Rep_996_c_22_45 | 51332 | 52327 | + | GT2 |
| TC | Rep_996_c_22 | Rep_996_c_22_46 | 52432 | 54000 | - | 1.B.52.2.1 |
| STP | Rep_996_c_22 | Rep_996_c_22_47 | 54392 | 55354 | - | CheW | Response_reg |
| pfam | Rep_996_c_22 | Rep_996_c_22_48 | 55532 | 55924 | + | BOF |
| TC | Rep_996_c_22 | Rep_996_c_22_49 | 55988 | 57370 | - | 3.A.18.1.1 |
Gene ID: Rep_996_c_22_43
Type: CAZyme
Location: 49034 - 50023 (+)
Type: CAZyme
Location: 49034 - 50023 (+)
Gene ID: Rep_996_c_22_44
Type: pfam
Location: 50026 - 51315 (+)
Type: pfam
Location: 50026 - 51315 (+)
Gene ID: Rep_996_c_22_45
Type: CAZyme
Location: 51332 - 52327 (+)
Type: CAZyme
Location: 51332 - 52327 (+)
Gene ID: Rep_996_c_22_46
Type: TC
Location: 52432 - 54000 (-)
Type: TC
Location: 52432 - 54000 (-)
Gene ID: Rep_996_c_22_47
Type: STP
Location: 54392 - 55354 (-)
Type: STP
Location: 54392 - 55354 (-)
Gene ID: Rep_996_c_22_48
Type: pfam
Location: 55532 - 55924 (+)
Type: pfam
Location: 55532 - 55924 (+)
Gene ID: Rep_996_c_22_49
Type: TC
Location: 55988 - 57370 (-)
Type: TC
Location: 55988 - 57370 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Pantoea
Species
Pantoea septica
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.