Cluster: Rep_996_CGC21
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_996
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_996_c_19 | Rep_996_c_19_18 | 18701 | 19807 | - | 3.A.1.2.11 |
| TC | Rep_996_c_19 | Rep_996_c_19_19 | 19810 | 21324 | - | 3.A.1.2.11 |
| pfam | Rep_996_c_19 | Rep_996_c_19_20 | 21321 | 21929 | - | DUF2291 |
| TC | Rep_996_c_19 | Rep_996_c_19_21 | 21941 | 22882 | - | 3.A.1.2.11 |
| TF | Rep_996_c_19 | Rep_996_c_19_22 | 23066 | 24013 | + | MarR |
| CAZyme | Rep_996_c_19 | Rep_996_c_19_23 | 24018 | 24644 | - | GH23 |
Gene ID: Rep_996_c_19_18
Type: TC
Location: 18701 - 19807 (-)
Type: TC
Location: 18701 - 19807 (-)
Gene ID: Rep_996_c_19_19
Type: TC
Location: 19810 - 21324 (-)
Type: TC
Location: 19810 - 21324 (-)
Gene ID: Rep_996_c_19_20
Type: pfam
Location: 21321 - 21929 (-)
Type: pfam
Location: 21321 - 21929 (-)
Gene ID: Rep_996_c_19_21
Type: TC
Location: 21941 - 22882 (-)
Type: TC
Location: 21941 - 22882 (-)
Gene ID: Rep_996_c_19_22
Type: TF
Location: 23066 - 24013 (+)
Type: TF
Location: 23066 - 24013 (+)
Gene ID: Rep_996_c_19_23
Type: CAZyme
Location: 24018 - 24644 (-)
Type: CAZyme
Location: 24018 - 24644 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Pantoea
Species
Pantoea septica
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.