Cluster: Rep_98_CGC11
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_98
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_98_c_23 | Rep_98_c_23_2 | 2478 | 3494 | + | GT2 |
| pfam | Rep_98_c_23 | Rep_98_c_23_3 | 3754 | 4596 | - | Glyco_tranf_2_4 |
| NULL(UNKNOWN) | Rep_98_c_23 | Rep_98_c_23_4 | 4587 | 6221 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_98_c_23 | Rep_98_c_23_5 | 6372 | 8537 | - | 9.B.14.3.3 |
| pfam | Rep_98_c_23 | Rep_98_c_23_6 | 8693 | 10072 | - | DHOR |
| peptidase | Rep_98_c_23 | Rep_98_c_23_7 | 10464 | 11573 | - | M75.UPW |
| TC | Rep_98_c_23 | Rep_98_c_23_8 | 11623 | 12999 | - | 1.B.3.3.1 |
| pfam | Rep_98_c_23 | Rep_98_c_23_9 | 13243 | 14064 | + | PNP_UDP_1 |
| pfam | Rep_98_c_23 | Rep_98_c_23_10 | 14068 | 14721 | + | DNA_alkylation |
| CAZyme | Rep_98_c_23 | Rep_98_c_23_11 | 14742 | 16349 | + | GT3 |
| pfam | Rep_98_c_23 | Rep_98_c_23_12 | 17999 | 18481 | - | ATP-synt_C | ATP-synt_C |
| TC | Rep_98_c_23 | Rep_98_c_23_13 | 18527 | 20350 | - | 3.A.2.2.2 |
| pfam | Rep_98_c_23 | Rep_98_c_23_14 | 20347 | 20964 | - | ATP-synt_D |
| TC | Rep_98_c_23 | Rep_98_c_23_15 | 20997 | 22358 | - | 3.A.2.3.3 |
| TC | Rep_98_c_23 | Rep_98_c_23_16 | 22382 | 24142 | - | 3.A.2.3.3 |
Gene ID: Rep_98_c_23_2
Type: CAZyme
Location: 2478 - 3494 (+)
Type: CAZyme
Location: 2478 - 3494 (+)
Gene ID: Rep_98_c_23_3
Type: pfam
Location: 3754 - 4596 (-)
Type: pfam
Location: 3754 - 4596 (-)
Gene ID: Rep_98_c_23_4
Type:
Location: 4587 - 6221 (-)
Type:
Location: 4587 - 6221 (-)
Gene ID: Rep_98_c_23_5
Type: TC
Location: 6372 - 8537 (-)
Type: TC
Location: 6372 - 8537 (-)
Gene ID: Rep_98_c_23_6
Type: pfam
Location: 8693 - 10072 (-)
Type: pfam
Location: 8693 - 10072 (-)
Gene ID: Rep_98_c_23_7
Type: peptidase
Location: 10464 - 11573 (-)
Type: peptidase
Location: 10464 - 11573 (-)
Gene ID: Rep_98_c_23_8
Type: TC
Location: 11623 - 12999 (-)
Type: TC
Location: 11623 - 12999 (-)
Gene ID: Rep_98_c_23_9
Type: pfam
Location: 13243 - 14064 (+)
Type: pfam
Location: 13243 - 14064 (+)
Gene ID: Rep_98_c_23_10
Type: pfam
Location: 14068 - 14721 (+)
Type: pfam
Location: 14068 - 14721 (+)
Gene ID: Rep_98_c_23_11
Type: CAZyme
Location: 14742 - 16349 (+)
Type: CAZyme
Location: 14742 - 16349 (+)
Gene ID: Rep_98_c_23_12
Type: pfam
Location: 17999 - 18481 (-)
Type: pfam
Location: 17999 - 18481 (-)
Gene ID: Rep_98_c_23_13
Type: TC
Location: 18527 - 20350 (-)
Type: TC
Location: 18527 - 20350 (-)
Gene ID: Rep_98_c_23_14
Type: pfam
Location: 20347 - 20964 (-)
Type: pfam
Location: 20347 - 20964 (-)
Gene ID: Rep_98_c_23_15
Type: TC
Location: 20997 - 22358 (-)
Type: TC
Location: 20997 - 22358 (-)
Gene ID: Rep_98_c_23_16
Type: TC
Location: 22382 - 24142 (-)
Type: TC
Location: 22382 - 24142 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Porphyromonadaceae
Genus
Porphyromonas
Species
Porphyromonas sp902489445
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.